Plasmid NZ_CP086221.1

Sequence

Nucleotide Information

Accession NZ_CP086221.1
Description Escherichia coli strain 779 plasmid p779-1-MCR, complete sequence
Source refseq
Topology circular
Length 242460 bp
GC Content 0.46 %
Created at NCBI April 22, 2022



Assembly

Genome Data Information

Accession GCF_023024425.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 22826253

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Zhejiang
Original Query Type name
Coordinates (Lat/Lon) 29.00/120.00
Address China,Zhejiang

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
CP142544.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
CP142544.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_MK477606.1 See Comparison
CP142544.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_KU341381.1 See Comparison
CP142544.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_MK673547.1 See Comparison
CP142544.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
CP142544.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_MW356909.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2