Plasmid NZ_CP047556.1

Sequence

Nucleotide Information

Accession	NZ_CP047556.1
Description	Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 plasmid unnamed, complete sequence
Source	refseq
Topology	circular
Length	256080 bp
GC Content	0.46 %
Created at NCBI	Jan. 9, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (90371)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_004324315.2
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	9759453

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	31.23N;121.47E
Original Query Type	coordinates
Coordinates (Lat/Lon)	31.23/121.47
Address	People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM

Original Query	feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

KM877269.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_KY019259.1	See Comparison
NZ_MK477605.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_CP061125.1	See Comparison
NZ_CP118602.1	See Comparison
KM877269.1	See Comparison
NZ_CP090530.1	See Comparison
CP101353.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP047551.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
CP047536.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_MK477605.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_KY019259.1	See Comparison
KM877269.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_CP061125.1	See Comparison
NZ_CP118602.1	See Comparison
CP101353.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP047551.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
CP047536.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_CP090530.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_MK477605.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_KY019259.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_CP118602.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_CP061125.1	See Comparison
KM877269.1	See Comparison
NZ_CP047551.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
CP047536.1	See Comparison
CP101353.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP090530.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_MK477605.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_KY019259.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_CP118602.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_CP061125.1	See Comparison
NZ_CP047551.1	See Comparison
CP101353.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
CP047536.1	See Comparison
NZ_CP090530.1	See Comparison
KM877269.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_MK477605.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_KY019259.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_CP118602.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_CP061125.1	See Comparison
NZ_MK477605.1	See Comparison
CP101353.1	See Comparison
NZ_CP090530.1	See Comparison
NZ_CP041174.1	See Comparison
NZ_LT795115.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP047551.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
CP047536.1	See Comparison
KM877269.1	See Comparison
NZ_CP133488.1	See Comparison
NZ_KY019259.1	See Comparison
NZ_MG773376.1	See Comparison
NZ_MH522418.1	See Comparison
NZ_KT334335.1	See Comparison
NZ_KY019258.1	See Comparison
NZ_KU341381.1	See Comparison
NZ_CP118602.1	See Comparison
NZ_CP061120.1	See Comparison
NZ_CP061125.1	See Comparison
NZ_CP090530.1	See Comparison
CP101353.1	See Comparison
NZ_CP098835.1	See Comparison
NZ_CP047547.1	See Comparison
NZ_CP047526.1	See Comparison
NZ_CP047556.1	See Comparison
CP047536.1	See Comparison
NZ_CP047551.1	See Comparison
NZ_CP047541.1	See Comparison
NZ_CP047528.1	See Comparison
NZ_CP047549.1	See Comparison
NZ_CP047545.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore