Plasmid NZ_CP124434.1

Sequence

Nucleotide Information

Accession	NZ_CP124434.1
Description	Escherichia coli strain AVS0051 plasmid pAVS0051-E, complete sequence
Source	refseq
Topology	circular
Length	2089 bp
GC Content	0.47 %
Created at NCBI	May 21, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030038915.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	34360971

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland,Kanton Zug
Original Query Type	name
Coordinates (Lat/Lon)	47.15/8.55
Address	Switzerland,Kanton Zug

ECOSYSTEM

Original Query	environmental: river/lake
Classification	aquatic,freshwater,river
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP061366.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP054163.1	See Comparison
NZ_CP085067.1	See Comparison
CP077278.1	See Comparison
CP077227.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP135663.1	See Comparison
NC_016824.1	See Comparison
NZ_CP030115.1	See Comparison
AP027720.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP058924.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP054163.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_CP085067.1	See Comparison
CP077278.1	See Comparison
CP077227.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP069674.1	See Comparison
NC_016824.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP030115.1	See Comparison
AP027720.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP151675.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP091690.1	See Comparison
NC_016824.1	See Comparison
NZ_CP054163.1	See Comparison
CP077278.1	See Comparison
CP077227.1	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP085067.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP030115.1	See Comparison
AP027720.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP124434.1	See Comparison
NZ_CP048370.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP060960.1	See Comparison
CP077278.1	See Comparison
NZ_CP085067.1	See Comparison
CP077227.1	See Comparison
NZ_CP054163.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP053255.2	See Comparison
NC_016824.1	See Comparison
NZ_CP030115.1	See Comparison
NZ_CP029366.1	See Comparison
AP027720.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP149251.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_CP085067.1	See Comparison
NZ_CP054163.1	See Comparison
CP077278.1	See Comparison
CP077227.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP030115.1	See Comparison
NC_016824.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP135663.1	See Comparison
AP027720.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP151675.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP058920.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_CP060960.1	See Comparison
NZ_AP022212.1	See Comparison
NZ_CP061366.1	See Comparison
NZ_CP069211.1	See Comparison
NZ_CP043278.1	See Comparison
NZ_CP135663.1	See Comparison
NZ_CP085067.1	See Comparison
NC_016824.1	See Comparison
AP027720.1	See Comparison
NZ_CP135222.1	See Comparison
NZ_CP091690.1	See Comparison
NZ_CP054163.1	See Comparison
CP077278.1	See Comparison
CP077227.1	See Comparison
NZ_CP053255.2	See Comparison
NZ_CP069674.1	See Comparison
NZ_CP030115.1	See Comparison
NZ_CP029366.1	See Comparison
NZ_CP149251.1	See Comparison
NZ_CP058899.1	See Comparison
NZ_CP058924.1	See Comparison
NZ_CP058920.1	See Comparison
CP125026.1	See Comparison
CP125052.1	See Comparison
NZ_CP124404.1	See Comparison
NZ_CP060427.1	See Comparison
NZ_CP151675.1	See Comparison
NZ_CP058660.1	See Comparison
NZ_CP048370.1	See Comparison
NZ_CP046422.1	See Comparison
NZ_CP070444.1	See Comparison
NZ_CP070004.1	See Comparison
NZ_CP145688.1	See Comparison
NZ_CP050362.1	See Comparison
NZ_CP070458.1	See Comparison
NZ_AP022212.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore