Plasmid NZ_CP053769.1

Sequence

Nucleotide Information

Accession NZ_CP053769.1
Description Klebsiella pneumoniae strain BA10835 plasmid pColRNAI, complete sequence
Source refseq
Topology circular
Length 9730 bp
GC Content 0.53 %
Created at NCBI May 26, 2020



Assembly

Genome Data Information

Accession GCF_011742585.2
Assembly Coverage 146


Biosample

Curated Collection Information
Accession 14402356

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP079729.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP040596.1 See Comparison
NZ_CP036196.1 See Comparison
CP035911.1 See Comparison
CP139235.1 See Comparison
CP139229.1 See Comparison
NZ_CP132718.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
NZ_CP130661.1 See Comparison
CP128694.1 See Comparison
NZ_CP141572.1 See Comparison
NZ_CP045679.1 See Comparison
CP058802.1 See Comparison
NZ_CP053775.1 See Comparison
NZ_CP053769.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP092651.1 See Comparison
NZ_CP115152.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP097390.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP045679.1 See Comparison
NZ_CP079729.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP040596.1 See Comparison
NZ_CP132718.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
CP128694.1 See Comparison
CP058802.1 See Comparison
NZ_CP053775.1 See Comparison
NZ_CP036196.1 See Comparison
CP035911.1 See Comparison
CP139235.1 See Comparison
CP139229.1 See Comparison
NZ_CP130661.1 See Comparison
NZ_CP141572.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP115152.1 See Comparison
NZ_CP097390.1 See Comparison
CP139235.1 See Comparison
NZ_CP079729.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP040596.1 See Comparison
NZ_CP092651.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP036196.1 See Comparison
CP035911.1 See Comparison
CP139229.1 See Comparison
NZ_CP130661.1 See Comparison
NZ_CP132718.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
CP058802.1 See Comparison
CP128694.1 See Comparison
NZ_CP141572.1 See Comparison
NZ_CP053775.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP115152.1 See Comparison
NZ_CP045679.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP079729.1 See Comparison
NZ_CP097390.1 See Comparison
NZ_CP092651.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP040596.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP141572.1 See Comparison
NZ_CP036196.1 See Comparison
CP035911.1 See Comparison
NZ_CP132718.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
CP128694.1 See Comparison
CP139235.1 See Comparison
CP139229.1 See Comparison
NZ_CP130661.1 See Comparison
NZ_CP115152.1 See Comparison
CP058802.1 See Comparison
NZ_CP053775.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP045679.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP097390.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP092651.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP079729.1 See Comparison
NZ_CP036196.1 See Comparison
NZ_CP040596.1 See Comparison
CP035911.1 See Comparison
NZ_CP132718.1 See Comparison
CP139235.1 See Comparison
CP139229.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
CP058802.1 See Comparison
NZ_CP130661.1 See Comparison
CP128694.1 See Comparison
NZ_CP141572.1 See Comparison
NZ_CP053775.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP115152.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP045679.1 See Comparison
NZ_CP071088.1 See Comparison
NZ_CP097390.1 See Comparison
NZ_CP092651.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP079602.1 See Comparison
NZ_CP079677.1 See Comparison
NZ_CP079167.1 See Comparison
NZ_CP079729.1 See Comparison
NZ_CP036196.1 See Comparison
NZ_CP040596.1 See Comparison
CP035911.1 See Comparison
NZ_CP132718.1 See Comparison
CP139235.1 See Comparison
CP139229.1 See Comparison
NZ_CP132708.1 See Comparison
NZ_CP132701.1 See Comparison
NZ_CP132627.1 See Comparison
NZ_CP132633.1 See Comparison
NZ_CP130661.1 See Comparison
NZ_CP141572.1 See Comparison
CP128694.1 See Comparison
NZ_CP047705.1 See Comparison
NZ_CP053775.1 See Comparison
CP058802.1 See Comparison
NZ_CP045679.1 See Comparison
NZ_CP119124.1 See Comparison
NZ_CP115152.1 See Comparison
NZ_CP083934.1 See Comparison
NZ_CP100080.1 See Comparison
NZ_CP083058.1 See Comparison
NZ_CP103506.1 See Comparison
NZ_CP097390.1 See Comparison
NZ_CP092651.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore