Plasmid NZ_CP079167.1
Sequence
Nucleotide Information
| Accession | NZ_CP079167.1 |
|---|---|
| Description | Klebsiella pneumoniae subsp. pneumoniae strain WRC09_CMC309PC plasmid pCMC309P_P3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 9730 bp |
| GC Content | 0.53 % |
| Created at NCBI | July 22, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (72407) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 20115187 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 12.9165N;79.1325E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 12.92/79.13 |
| Address | NH38, Vellore, Vellore District, Tamil Nadu, 632008, India |
ECOSYSTEM
| Original Query | Homo sapiens,Endotracheal aspirate |
|---|---|
| Classification | host_associated,respiratory_system,trachea |
| Host-associated Taxon |
|
DISEASE
| Original Query | Pneumoniae |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
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Oranges
Greens
100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | TonB-dependent siderophore receptor | copy | ||
| PGAG | TraM recognition domain-containing protein | copy | ||
| PGAG | mobC | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | YncE family protein | copy | ||
| MOB-typer | MOBC | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 11 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_009793_00003 | MOBC | 4983 | 5711 | plus | 95.885 | 100 | 3.84e-144 | 452 |
| replicon | 000003__NC_002119_00001 | ColRNAI_rep_cluster_1857 | 1641 | 2222 | minus | 98.625 | 100 | 0 | 1031 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |