Plasmid NZ_CP053767.1

Sequence

Nucleotide Information

Accession NZ_CP053767.1
Description Klebsiella pneumoniae strain BA10835 plasmid pIncFIBK, complete sequence
Source refseq
Topology circular
Length 211810 bp
GC Content 0.52 %
Created at NCBI May 26, 2020



Assembly

Genome Data Information

Accession GCF_011742585.2
Assembly Coverage 146


Biosample

Curated Collection Information
Accession 14402356

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP026752.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP053767.1 See Comparison
NZ_KT203286.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP026752.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_KT203286.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP026752.1 See Comparison
NZ_KT203286.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_CP026752.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_KT203286.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_CP059470.1 See Comparison
NZ_CP026752.1 See Comparison
NZ_KT203286.1 See Comparison
NZ_CP091599.1 See Comparison
NZ_CP079600.1 See Comparison
NZ_CP083045.1 See Comparison
NZ_CP083049.1 See Comparison
NZ_CP079625.1 See Comparison
NZ_CP079674.1 See Comparison
NZ_CP079670.1 See Comparison
NZ_CP079157.1 See Comparison
NZ_CP079147.1 See Comparison
NZ_CP079630.1 See Comparison
NZ_CP079165.1 See Comparison
NZ_CP079152.1 See Comparison
NZ_CP079140.1 See Comparison
NZ_CP020069.1 See Comparison
NZ_CP026752.1 See Comparison
NZ_CP021710.1 See Comparison
NZ_CP020855.1 See Comparison
NZ_KT203286.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore