Plasmid NZ_CP053766.1

Sequence

Nucleotide Information

Accession NZ_CP053766.1
Description Klebsiella pneumoniae strain BA10835 plasmid pvirulence_VBA10835, complete sequence
Source refseq
Topology circular
Length 307718 bp
GC Content 0.47 %
Created at NCBI May 26, 2020



Assembly

Genome Data Information

Accession GCF_011742585.2
Assembly Coverage 146


Biosample

Curated Collection Information
Accession 14402356

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(3)-Ib/AAC(6')-Ib3 bifunctional proteincopy
amrfinderplusqacEdelta1copy
amrfinderplusmerTcopy
amrfinderplusmerEcopy
amrfinderplusmph(E)copy
amrfinderplusmsr(E)copy
amrfinderplusterEcopy
amrfinderplusterDcopy
amrfinderplusterCcopy
amrfinderplusterBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 314 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP024497_00001IncFIB11089plus92.75210001574
repliconJN420336IncHI1B205777206346minus10010001053
relaxaseNC_016980_00239MOBH6138564330minus10010001949
mate-pair-formationNC_016980_00240MPF_F5926961392minus10010001480
mate-pair-formationNC_018107_00101MPF_F6958571024plus96.251000923
mate-pair-formationNC_016980_00110MPF_F238661239695minus1001000718
mate-pair-formationNC_016980_00109MPF_F239695241053minus1001000939
mate-pair-formationNC_016980_00099MPF_T251755254469minus10010001846
mate-pair-formationNC_018107_00235MPF_F258430259596minus93.0591000707
mate-pair-formationNC_023911_00309MPF_F259601260458minus92.3081004.7499999999999997e-172534
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2