Plasmid NZ_CP053752.1

Sequence

Nucleotide Information

Accession	NZ_CP053752.1
Description	Shigella sonnei strain 506 plasmid pMHMC-001, complete sequence
Source	refseq
Topology	circular
Length	212834 bp
GC Content	0.45 %
Created at NCBI	July 12, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella sonnei (624)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_sonnei (624)
Strain

Assembly

Genome Data Information

Accession	GCF_013201485.1
Assembly Coverage	445

Biosample

Curated Collection Information

Accession	7663113

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,Boston
Original Query Type	name
Coordinates (Lat/Lon)	42.36/-71.06
Address	USA,Boston

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)
Host-associated Age	51
Host-associated Sex	male

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP102113.1	See Comparison
NZ_CP010830.1	See Comparison
NC_007385.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP140620.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_MW396859.1	See Comparison
NZ_CP046285.1	See Comparison
CP102113.1	See Comparison
NZ_CP109776.1	See Comparison
CP104427.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP053752.1	See Comparison
NZ_CP010830.1	See Comparison
NC_007385.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP046285.1	See Comparison
NZ_CP140620.1	See Comparison
NZ_CP109776.1	See Comparison
NZ_MW396859.1	See Comparison
CP104427.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison
CP102113.1	See Comparison
NC_007385.1	See Comparison
NZ_CP010830.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP046285.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_CP140620.1	See Comparison
NZ_CP109776.1	See Comparison
NZ_MW396859.1	See Comparison
CP104427.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison
NZ_CP010830.1	See Comparison
CP102113.1	See Comparison
NC_007385.1	See Comparison
NZ_CP046285.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_CP140620.1	See Comparison
CP104427.1	See Comparison
NZ_MW396859.1	See Comparison
NZ_CP109776.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison
NC_007385.1	See Comparison
NZ_CP010830.1	See Comparison
CP102113.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP140620.1	See Comparison
CP102113.1	See Comparison
NZ_CP046285.1	See Comparison
NZ_MW396859.1	See Comparison
NZ_CP109776.1	See Comparison
CP104427.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison
NC_007385.1	See Comparison
NZ_CP010830.1	See Comparison
NZ_CP151313.1	See Comparison
NZ_CP019696.1	See Comparison
NZ_CP023646.1	See Comparison
NZ_CP151392.1	See Comparison
NZ_CP046285.1	See Comparison
NZ_CP146291.1	See Comparison
NZ_CP140620.1	See Comparison
CP104427.1	See Comparison
NZ_MW396859.1	See Comparison
NZ_CP109776.1	See Comparison
CP104421.1	See Comparison
CP104417.1	See Comparison
CP104409.1	See Comparison
CP104430.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore