Plasmid NZ_CP023646.1

Sequence

Nucleotide Information

Accession NZ_CP023646.1
Description Shigella sonnei strain CFSAN030807 plasmid pCFSAN030807_1, complete sequence
Source refseq
Topology circular
Length 214673 bp
GC Content 0.45 %
Created at NCBI Oct. 9, 2019



Assembly

Genome Data Information

Accession GCF_002442535.1
Assembly Coverage 700


Biosample

Curated Collection Information
Accession 3612247

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Somalia
Original Query Type name
Coordinates (Lat/Lon) 8.37/49.08
Address Somalia

ECOSYSTEM
Original Query Homo sapiens,human
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP053752.1 See Comparison
CP102113.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_MW396859.1 See Comparison
NC_007385.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP046285.1 See Comparison
CP102113.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NC_007385.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP019696.1 See Comparison
NC_007385.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP109776.1 See Comparison
NZ_MW396859.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP010830.1 See Comparison
CP102113.1 See Comparison
NZ_CP053752.1 See Comparison
NC_007385.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP046285.1 See Comparison
CP104427.1 See Comparison
NZ_CP109776.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP151293.1 See Comparison
NC_007385.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP109776.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP046285.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP053752.1 See Comparison
CP102113.1 See Comparison
NC_007385.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151293.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP146291.1 See Comparison
CP104427.1 See Comparison
CP102113.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP109776.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NC_007385.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP019696.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2