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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid CP104430.1
Sequence
Nucleotide Information
Accession
CP104430.1
Description
Shigella sonnei strain 1519721 plasmid p1519721_1, complete sequence
Source
insd
Topology
circular
Length
212642 bp
GC Content
0.45 %
Created at NCBI
Sept. 22, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Shigella sonnei (624)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Shigella (620)
Species
Shigella_sonnei (624)
Strain
Assembly
Genome Data Information
Accession
GCA_025369995.1
Assembly Coverage
52
Biosample
Curated Collection Information
Accession
22962688
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom,United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom,United Kingdom
ECOSYSTEM
Original Query
Homo sapiens
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
CP104434.1
CP104433.1
CP104432.1
Similar Plasmids
based on Mash distance
NZ_CP019696.1
See Comparison
NZ_CP151313.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_CP146291.1
See Comparison
NZ_CP140620.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_MW396859.1
See Comparison
NZ_CP109776.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
NZ_CP053752.1
See Comparison
CP102113.1
See Comparison
NZ_CP151313.1
See Comparison
NC_007385.1
See Comparison
NZ_CP010830.1
See Comparison
NZ_CP023646.1
See Comparison
NZ_CP019696.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_CP146291.1
See Comparison
NZ_CP140620.1
See Comparison
CP102113.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_MW396859.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
NZ_CP109776.1
See Comparison
NZ_CP053752.1
See Comparison
NZ_CP010830.1
See Comparison
NZ_CP023646.1
See Comparison
NC_007385.1
See Comparison
NZ_CP151313.1
See Comparison
NZ_CP019696.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_CP140620.1
See Comparison
NZ_CP146291.1
See Comparison
NC_007385.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_MW396859.1
See Comparison
NZ_CP010830.1
See Comparison
NZ_CP109776.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
CP104430.1
See Comparison
CP102113.1
See Comparison
NZ_CP053752.1
See Comparison
NZ_CP023646.1
See Comparison
NZ_CP146291.1
See Comparison
NZ_CP019696.1
See Comparison
NZ_CP151313.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_MW396859.1
See Comparison
NZ_CP140620.1
See Comparison
NZ_CP109776.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_CP053752.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
CP102113.1
See Comparison
NZ_CP023646.1
See Comparison
NZ_CP010830.1
See Comparison
NC_007385.1
See Comparison
NZ_CP019696.1
See Comparison
NZ_CP151313.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_CP109776.1
See Comparison
NZ_CP140620.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_MW396859.1
See Comparison
NZ_CP146291.1
See Comparison
CP102113.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
NZ_CP010830.1
See Comparison
NZ_CP053752.1
See Comparison
NC_007385.1
See Comparison
NZ_CP140620.1
See Comparison
NZ_CP023646.1
See Comparison
NZ_CP151313.1
See Comparison
NZ_CP151392.1
See Comparison
NZ_CP019696.1
See Comparison
NZ_CP146291.1
See Comparison
NZ_CP046285.1
See Comparison
NZ_CP109776.1
See Comparison
NZ_MW396859.1
See Comparison
CP104427.1
See Comparison
CP104421.1
See Comparison
CP104417.1
See Comparison
CP104409.1
See Comparison
NZ_CP010830.1
See Comparison
CP102113.1
See Comparison
NZ_CP053752.1
See Comparison
NZ_CP023646.1
See Comparison
NC_007385.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore