Plasmid NZ_CP151313.1

Sequence

Nucleotide Information

Accession NZ_CP151313.1
Description Shigella sonnei strain R21.0552 plasmid pR21.0552_214k, complete sequence
Source refseq
Topology circular
Length 214336 bp
GC Content 0.45 %
Created at NCBI April 18, 2024



Biosample

Curated Collection Information
Accession 39735802

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP010830.1 See Comparison
NC_007385.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
CP102113.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP019696.1 See Comparison
NC_007385.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP046285.1 See Comparison
CP102113.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP140620.1 See Comparison
NC_007385.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP010830.1 See Comparison
NC_007385.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP140620.1 See Comparison
NC_007385.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP109776.1 See Comparison
CP102113.1 See Comparison
NZ_CP010830.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP046285.1 See Comparison
CP104421.1 See Comparison
NZ_CP109776.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP023646.1 See Comparison
CP104427.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP010830.1 See Comparison
CP102113.1 See Comparison
NC_007385.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP109776.1 See Comparison
NZ_MW396859.1 See Comparison
CP102113.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP010830.1 See Comparison
NC_007385.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusvirFcopy
amrfinderplusipaDcopy
amrfinderplusipaH9.8copy
amrfinderpluscapUcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGplasmid stabilization proteincopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
PGAGIS91 family transposasecopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 164 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021819_00066MOBP153897154367plus87.2611002.13e-85286
relaxaseNC_017627_00068MOBF202920207197plus97.47510002763
relaxaseNC_011964_00125MOBF208461209453plus95.166985.25e-174567
mate-pair-formation08-5333_00200MPF_Unknown200048202201plus98.3369801415
repliconCP030786_00062IncFIA1858plus94.17210001308
repliconAY458016IncFIC214080214336minus96.124995.02e-115420
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 6 of 6 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2