Plasmid NZ_CP019696.1

Sequence

Nucleotide Information

Accession NZ_CP019696.1
Description Shigella sonnei strain 75/02 plasmid pInv_75_02_1, complete sequence
Source refseq
Topology circular
Length 214565 bp
GC Content 0.45 %
Created at NCBI Aug. 4, 2017



Assembly

Genome Data Information

Accession GCF_002150905.1
Assembly Coverage 140


Biosample

Curated Collection Information

Accession 6286561

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.0335N;17.5364E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.03/17.54
Address Ady Endre utca, Halimba, Ajkai járás, Veszprém, Central Transdanubia, Transdanubia, 8452, Hungary

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
  • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization




Similar Plasmids

based on Mash distance

NZ_CP010830.1 See Comparison
NC_007385.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP019696.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP023646.1 See Comparison
CP102113.1 See Comparison
NZ_CP053752.1 See Comparison
NC_007385.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP109776.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP010830.1 See Comparison
NC_007385.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP109776.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP053752.1 See Comparison
CP102113.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP151392.1 See Comparison
NC_007385.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP109776.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP053752.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
CP102113.1 See Comparison
NC_007385.1 See Comparison
NZ_CP010830.1 See Comparison
NZ_CP023646.1 See Comparison
CP104427.1 See Comparison
NZ_CP146291.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP109776.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP151313.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_CP010830.1 See Comparison
CP102113.1 See Comparison
NC_007385.1 See Comparison
NZ_CP023646.1 See Comparison
NZ_CP151392.1 See Comparison
NZ_CP046285.1 See Comparison
NZ_CP140620.1 See Comparison
NZ_CP146291.1 See Comparison
CP104427.1 See Comparison
CP104421.1 See Comparison
CP104417.1 See Comparison
CP104409.1 See Comparison
CP104430.1 See Comparison
NZ_CP053752.1 See Comparison
NZ_MW396859.1 See Comparison
NZ_CP109776.1 See Comparison
CP102113.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore