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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP053756.1
Sequence
Nucleotide Information
Accession
NZ_CP053756.1
Description
Shigella sonnei strain 506 plasmid pMHMC-005, complete sequence
Source
refseq
Topology
circular
Length
6015 bp
GC Content
0.49 %
Created at NCBI
July 12, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Shigella sonnei (624)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Shigella (620)
Species
Shigella_sonnei (624)
Strain
Assembly
Genome Data Information
Accession
GCF_013201485.1
Assembly Coverage
445
Biosample
Curated Collection Information
Accession
7663113
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,Boston
Original Query Type
name
Coordinates (Lat/Lon)
42.36/-71.06
Address
USA,Boston
ECOSYSTEM
Original Query
Homo sapiens,stool
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Age
51
Host-associated Sex
male
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP053763.1
NZ_CP053762.1
NZ_CP053761.1
NZ_CP053760.1
NZ_CP053759.1
NZ_CP053758.1
NZ_CP053757.1
NZ_CP053755.1
NZ_CP053754.1
NZ_CP053753.1
NZ_CP053752.1
Similar Plasmids
based on Mash distance
NZ_CP110406.1
See Comparison
NZ_CP110400.1
See Comparison
CP037999.1
See Comparison
NZ_CP151317.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_KP970685.1
See Comparison
CP037999.1
See Comparison
CP125024.1
See Comparison
CP125018.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP110406.1
See Comparison
NZ_CP110400.1
See Comparison
CP125024.1
See Comparison
CP125018.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP110406.1
See Comparison
NZ_CP151317.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_KP970685.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_CP110400.1
See Comparison
NZ_CP053756.1
See Comparison
NZ_CP151317.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_CP110406.1
See Comparison
NZ_CP110400.1
See Comparison
CP037999.1
See Comparison
CP125024.1
See Comparison
CP125018.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_KP970685.1
See Comparison
CP037999.1
See Comparison
CP125024.1
See Comparison
CP125018.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_KP970685.1
See Comparison
NZ_CP151317.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_CP110406.1
See Comparison
NZ_CP110400.1
See Comparison
CP125024.1
See Comparison
CP037999.1
See Comparison
CP125018.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP110406.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_CP151317.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_KP970685.1
See Comparison
NZ_CP110400.1
See Comparison
CP037999.1
See Comparison
NZ_CP151317.1
See Comparison
CP125024.1
See Comparison
CP125018.1
See Comparison
NZ_CP152300.1
See Comparison
NZ_CP151367.1
See Comparison
NZ_CP151387.1
See Comparison
NZ_CP140625.1
See Comparison
NZ_KP970685.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP152300.1
Sequence
Accession
:
NZ_CP152300.1
Description
: Shigella sonnei strain R16.0823 plasmid pR16.0823_6k, complete sequence
Source
: refseq
Created at NCBI
: May 20, 2024
Host Taxonomy
Assigned Host
:
Shigella sonnei (624)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Shigella (620)
Species
:
Shigella_sonnei (624)
Strain
:
Biosample
Accession
:
40123227
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore