Plasmid NZ_CP049841.1
Sequence
Nucleotide Information
Accession | NZ_CP049841.1 |
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Description | Escherichia coli strain UPEC-455U/190220 plasmid pEcoUTI1c, complete sequence |
Source | refseq |
Topology | circular |
Length | 5630 bp |
GC Content | 0.47 % |
Created at NCBI | Aug. 4, 2021 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 14277528 |
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PLASMID INFORMATION
BIOSAMPLE_pathotype | Escherichia coli, UPEC |
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GEOGRAPHICAL INFORMATION
Original Query | Mexico,Mexico City |
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Original Query Type | name |
Coordinates (Lat/Lon) | 19.43/-99.13 |
Address | Mexico,Mexico City |
ECOSYSTEM
Original Query | Homo sapiens,Biopsy of human bladder epithelium,bladder epithelial biopsy from 60-year-old female patient with recurrent urinary tract infection |
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Classification | bladder,disease,host_associated,urinary_system |
Host-associated Taxon |
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Host-associated Age | 60 years |
Host-associated Sex | female |
DISEASE
Original Query | Recurrent urinary tract infection,chronic disease,chronic disease,chronic disease |
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DOID/SYMP |
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Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
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B
Source | Element Name | Display | Sequence | Favorite |
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PGAG | hypothetical protein | copy | ||
PGAG | DMT family transporter | copy | ||
PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
PGAG | MbeB family mobilization protein | copy | ||
PGAG | MbeD family mobilization/exclusion protein | copy | ||
MOB-typer | MOBP | copy | ||
MOB-typer | MOBP | copy | ||
MOB-typer | rep_cluster_2401 | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
relaxase | NC_022662_00003 | MOBP | 3157 | 4719 | plus | 100 | 100 | 0 | 1004 |
oriT | NC_019078 | MOBP | 2412 | 2494 | plus | 100 | 100 | 1.3400000000000002e-35 | 154 |
replicon | CP039864_00003 | rep_cluster_2401 | 1768 | 1956 | plus | 100 | 100 | 4.63e-94 | 350 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |