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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP036185.1
Sequence
Nucleotide Information
Accession
NZ_CP036185.1
Description
Escherichia coli strain WCHEC025970 plasmid p6_025970, complete sequence
Source
refseq
Topology
circular
Length
2444 bp
GC Content
0.49 %
Created at NCBI
Feb. 27, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_004295365.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
10956393
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China,Chengdu,Sichuan
Original Query Type
name
Coordinates (Lat/Lon)
30.64/104.07
Address
China,Chengdu,Sichuan
ECOSYSTEM
Original Query
Homo sapiens,Pure culture
Classification
cell_culture,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP036184.1
NZ_CP036183.1
NZ_CP036182.1
NZ_CP036181.1
NZ_CP036180.1
NZ_CP036179.1
NZ_CP036178.1
Similar Plasmids
based on Mash distance
NZ_CP032421.1
See Comparison
NZ_CP026575.2
See Comparison
AP027719.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_AP027892.1
See Comparison
CP057703.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_LR890450.1
See Comparison
AP022237.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_AP024209.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_CP092980.1
See Comparison
NZ_AP025213.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP026575.2
See Comparison
NZ_CP032421.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_AP027762.1
See Comparison
AP027719.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_AP027892.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_CP139363.1
See Comparison
AP022237.1
See Comparison
NZ_AP024209.1
See Comparison
CP057703.1
See Comparison
NZ_LR890450.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP092980.1
See Comparison
NZ_AP025213.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP032421.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_CP026575.2
See Comparison
AP027719.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_AP027892.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP139363.1
See Comparison
AP022237.1
See Comparison
NZ_CP061130.1
See Comparison
CP057703.1
See Comparison
NZ_LR890450.1
See Comparison
NZ_AP024209.1
See Comparison
NZ_CP092980.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_AP025213.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_AP025208.1
See Comparison
CP057703.1
See Comparison
NZ_CP032421.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_AP027892.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP026575.2
See Comparison
AP027719.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_LR890450.1
See Comparison
AP022237.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_AP024209.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_CP092980.1
See Comparison
NZ_CP026575.2
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP032421.1
See Comparison
NZ_AP025213.1
See Comparison
NZ_AP025208.1
See Comparison
AP027719.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_AP027892.1
See Comparison
AP022237.1
See Comparison
NZ_CP139363.1
See Comparison
CP057703.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_AP024209.1
See Comparison
NZ_LR890450.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP092980.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_AP025213.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP026575.2
See Comparison
NZ_CP032421.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP065107.1
See Comparison
AP027719.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_AP027892.1
See Comparison
CP057703.1
See Comparison
NZ_LR890450.1
See Comparison
NZ_CP139363.1
See Comparison
AP022237.1
See Comparison
NZ_AP024209.1
See Comparison
NZ_CP103323.1
See Comparison
NZ_CP110982.1
See Comparison
NZ_CP043596.1
See Comparison
NZ_CP092980.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP060898.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_AP025213.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore