Plasmid NZ_CP036178.1

Sequence

Nucleotide Information

Accession NZ_CP036178.1
Description Escherichia coli strain WCHEC025970 plasmid pCTXM199_025970, complete sequence
Source refseq
Topology circular
Length 238258 bp
GC Content 0.46 %
Created at NCBI Feb. 27, 2019



Assembly

Genome Data Information

Accession GCF_004295365.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 10956393

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Chengdu,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.64/104.07
Address China,Chengdu,Sichuan

ECOSYSTEM
Original Query Homo sapiens,Pure culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP036178.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiBrucella suis mprFcopy
amrfinderplusoqxAcopy
amrfinderplusmph(A)copy
rgiMrxcopy
amrfinderplusqacEdelta1copy
amrfinderplusoqxBcopy
amrfinderplusterDcopy
amrfinderplusterZcopy
amrfinderplussul1copy
amrfinderplusterWcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 263 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_005211_00005MPF_F41074892plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F48956163plus1001000803
mate-pair-formationNC_005211_00012MPF_T1030412982plus99.88810001871
mate-pair-formationNC_021845_00017MPF_F3090432412plus99.0061000990
mate-pair-formationNC_005211_00030MPF_F3255433609plus99.716990734
mate-pair-formationNC_005211_00200MPF_F166430167842minus1001000933
mate-pair-formationNC_005211_00207MPF_F175920178001plus99.85610001421
oriTNC_015864MOBH168879169471plus10010001096
repliconBX664015IncHI2A211840plus99.52410001147
replicon000340__KU353730rep_cluster_10885724858210plus10010001779
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2