Plasmid NZ_CP139363.1

Sequence

Nucleotide Information

Accession NZ_CP139363.1
Description Escherichia coli strain EC147566 plasmid pEC147566-3, complete sequence
Source refseq
Topology circular
Length 4362 bp
GC Content 0.48 %
Created at NCBI Dec. 7, 2023



Assembly

Genome Data Information

Accession GCF_034119705.1
Assembly Coverage 43.46


Biosample

Curated Collection Information
Accession 38397467

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.19N;113.33E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.19/113.33
Address Southern Medical University, Chanchushi North Road, Tonghe, Baiyun District, Guangzhou City, Guangdong Province, 510515, China

ECOSYSTEM
Original Query Homo sapiens,ascites
Classification disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP061130.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_AP025213.1 See Comparison
NZ_CP043596.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_OY754376.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
AP022237.1 See Comparison
CP057703.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_AP024209.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_AP025213.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP043596.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_CP139363.1 See Comparison
CP057703.1 See Comparison
AP022237.1 See Comparison
NZ_AP024209.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_CP043596.1 See Comparison
NZ_OY754376.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_AP025213.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_OY754376.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
AP022237.1 See Comparison
CP057703.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_AP024209.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP043596.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_AP025213.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
AP022237.1 See Comparison
CP057703.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_OY754376.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_AP024209.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_OY754376.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_CP043596.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_AP025213.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP065107.1 See Comparison
CP057703.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_AP024209.1 See Comparison
AP022237.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_CP092980.1 See Comparison
NZ_CP110982.1 See Comparison
NZ_CP043596.1 See Comparison
NZ_CP103323.1 See Comparison
NZ_AP025213.1 See Comparison
NZ_CP060898.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP026575.2 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_LR890450.1 See Comparison
NZ_OY754376.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027762.1 See Comparison
NZ_AP027892.1 See Comparison
CP057703.1 See Comparison
AP022237.1 See Comparison
NZ_AP024209.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore