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v. 2024_05_31_v2
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Typing
Plasmid NZ_AP027762.1
Sequence
Nucleotide Information
Accession
NZ_AP027762.1
Description
Escherichia coli strain 2017-02-1CC plasmid p2017-02-1CC_3, complete sequence
Source
refseq
Topology
circular
Length
2442 bp
GC Content
0.49 %
Created at NCBI
April 4, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
38124505
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Viet Nam,Thai Binh
Original Query Type
name
Coordinates (Lat/Lon)
20.53/106.39
Address
Viet Nam,Thai Binh
ECOSYSTEM
Original Query
Homo sapiens,whole organism,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_AP027761.1
NZ_AP027760.1
Similar Plasmids
based on Mash distance
NZ_AP025208.1
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NZ_CP028780.2
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NZ_CP036185.1
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NZ_CP032421.1
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NZ_CP061130.1
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NZ_OY754376.1
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NZ_CP065107.1
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NZ_CP139363.1
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NZ_CP139363.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_OY754376.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP032421.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP032421.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_OY754376.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_OY754376.1
See Comparison
NZ_CP032421.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_CP036185.1
See Comparison
NZ_CP032421.1
See Comparison
NZ_OY754376.1
See Comparison
NZ_AP025208.1
See Comparison
NZ_CP028780.2
See Comparison
NZ_CP065107.1
See Comparison
NZ_AP027762.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_CP061130.1
See Comparison
NZ_CP065107.1
See Comparison
NZ_CP032421.1
See Comparison
NZ_OY754376.1
See Comparison
NZ_CP139363.1
See Comparison
NZ_CP061130.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore