Plasmid AP027719.1

Sequence

Nucleotide Information

Accession AP027719.1
Description Escherichia coli TBU0218_10-1CC plasmid pTBU0218_10-1CC_3 DNA, complete sequence
Source insd
Topology circular
Length 2442 bp
GC Content 0.49 %
Created at NCBI Nov. 3, 2023



Biosample

Curated Collection Information
Accession 38124498

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Viet Nam,Thai Binh
Original Query Type name
Coordinates (Lat/Lon) 20.53/106.39
Address Viet Nam,Thai Binh

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP027892.1 See Comparison
CP057703.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP036185.1 See Comparison
CP057703.1 See Comparison
AP027719.1 See Comparison
CP057703.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_AP027892.1 See Comparison
CP057703.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_CP065107.1 See Comparison
CP057703.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP061130.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP027892.1 See Comparison
CP057703.1 See Comparison
NZ_AP027892.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP065107.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP032421.1 See Comparison
NZ_AP025208.1 See Comparison
NZ_CP061130.1 See Comparison
CP057703.1 See Comparison
NZ_CP032421.1 See Comparison
NZ_CP036185.1 See Comparison
NZ_CP028780.2 See Comparison
NZ_CP065107.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2