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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP036182.1
Sequence
Nucleotide Information
Accession
NZ_CP036182.1
Description
Escherichia coli strain WCHEC025970 plasmid p3_025970, complete sequence
Source
refseq
Topology
circular
Length
3684 bp
GC Content
0.46 %
Created at NCBI
Feb. 27, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_004295365.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
10956393
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China,Chengdu,Sichuan
Original Query Type
name
Coordinates (Lat/Lon)
30.64/104.07
Address
China,Chengdu,Sichuan
ECOSYSTEM
Original Query
Homo sapiens,Pure culture
Classification
cell_culture,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP036185.1
NZ_CP036184.1
NZ_CP036183.1
NZ_CP036181.1
NZ_CP036180.1
NZ_CP036179.1
NZ_CP036178.1
Similar Plasmids
based on Mash distance
NZ_CP026573.2
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP082131.1
See Comparison
NZ_CP026573.2
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP036182.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP082131.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP026573.2
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP026573.2
See Comparison
NZ_CP082131.1
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP082131.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP026573.2
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP110121.1
See Comparison
NZ_CP026573.2
See Comparison
NZ_CP133457.1
See Comparison
NZ_CP082131.1
See Comparison
NZ_CP029114.1
See Comparison
NZ_CP128793.1
See Comparison
NZ_CP048375.1
See Comparison
NZ_CP048369.1
See Comparison
NZ_CP093287.1
See Comparison
NZ_CP092978.1
See Comparison
NZ_CP116164.1
See Comparison
NZ_CP060871.1
See Comparison
NZ_CP043283.1
See Comparison
NZ_CP082131.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore