Plasmid NZ_CP023653.1

Sequence

Nucleotide Information

Accession	NZ_CP023653.1
Description	Shigella sonnei strain CFSAN030807 plasmid pCFSAN030807_8, complete sequence
Source	refseq
Topology	circular
Length	2690 bp
GC Content	0.46 %
Created at NCBI	Oct. 9, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella sonnei (624)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_sonnei (624)
Strain

Assembly

Genome Data Information

Accession	GCF_002442535.1
Assembly Coverage	700

Biosample

Curated Collection Information

Accession	3612247

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Somalia
Original Query Type	name
Coordinates (Lat/Lon)	8.37/49.08
Address	Somalia

ECOSYSTEM

Original Query	Homo sapiens,human
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP140630.1	See Comparison
NZ_CP045940.1	See Comparison
NZ_OP113953.1	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_CP053760.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_MW133280.1	See Comparison
CP128226.1	See Comparison
NZ_CP019695.1	See Comparison
NZ_CP127086.1	See Comparison
NZ_CP023653.1	See Comparison
CP038000.1	See Comparison
NZ_CP130068.1	See Comparison
NZ_CP146294.2	See Comparison
NZ_CP146300.2	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
NZ_CP151362.1	See Comparison
CP128226.1	See Comparison
NZ_CP045940.1	See Comparison
NZ_OP113953.1	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_CP053760.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_MW133280.1	See Comparison
CP038000.1	See Comparison
NZ_CP130068.1	See Comparison
NZ_CP146294.2	See Comparison
NZ_CP140630.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_CP019695.1	See Comparison
NZ_CP146300.2	See Comparison
NZ_OP113953.1	See Comparison
NZ_CP127086.1	See Comparison
NZ_CP140630.1	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
NZ_CP151362.1	See Comparison
NZ_CP045940.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_CP053760.1	See Comparison
CP038000.1	See Comparison
NZ_MW133280.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_CP130068.1	See Comparison
NZ_CP127086.1	See Comparison
NZ_CP019695.1	See Comparison
CP128226.1	See Comparison
NZ_CP146294.2	See Comparison
NZ_CP140630.1	See Comparison
NZ_CP146300.2	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
NZ_CP151362.1	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP045940.1	See Comparison
NZ_OP113953.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_CP053760.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_MW133280.1	See Comparison
NZ_CP146294.2	See Comparison
CP038000.1	See Comparison
NZ_CP130068.1	See Comparison
CP128226.1	See Comparison
NZ_CP019695.1	See Comparison
NZ_CP127086.1	See Comparison
NZ_CP146300.2	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
NZ_CP151362.1	See Comparison
NZ_CP140630.1	See Comparison
NZ_CP045940.1	See Comparison
NZ_OP113953.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_CP053760.1	See Comparison
NZ_MW133280.1	See Comparison
NZ_CP127086.1	See Comparison
CP038000.1	See Comparison
NZ_CP019695.1	See Comparison
NZ_CP130068.1	See Comparison
CP128226.1	See Comparison
NZ_CP146294.2	See Comparison
NZ_CP045940.1	See Comparison
NZ_CP146300.2	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
NZ_CP151362.1	See Comparison
NZ_CP140630.1	See Comparison
NZ_CP109780.1	See Comparison
NZ_OP113953.1	See Comparison
NZ_MW133281.1	See Comparison
NZ_CP110408.1	See Comparison
NZ_CP110402.1	See Comparison
NZ_CP053760.1	See Comparison
NZ_MW133282.1	See Comparison
NZ_MW133280.1	See Comparison
NZ_CP151309.1	See Comparison
NZ_CP019695.1	See Comparison
NZ_CP130068.1	See Comparison
NZ_CP146300.2	See Comparison
NZ_CP151389.1	See Comparison
NZ_CP151380.1	See Comparison
CP038000.1	See Comparison
NZ_CP127086.1	See Comparison
CP128226.1	See Comparison
NZ_CP146294.2	See Comparison
NZ_CP151355.1	See Comparison
NZ_CP151321.1	See Comparison
NZ_CP151400.1	See Comparison
NZ_CP151362.1	See Comparison
NZ_CP151370.1	See Comparison
NZ_CP151341.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore