Plasmid NZ_CP012927.1
Sequence
Nucleotide Information
| Accession | NZ_CP012927.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 plasmid p12-4374_3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 3372 bp |
| GC Content | 0.55 % |
| Created at NCBI | Jan. 27, 2016 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (611) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4156727 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Canada,Quebec |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.48/-71.83 |
| Address | Canada,Quebec |
ECOSYSTEM
| Original Query | Homo sapiens,human stool |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Salmonella gastroenteretis |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_CP012934.1
- Description: Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_3-2, complete sequence
- Source: refseq
- Created at NCBI: Jan. 27, 2016
-
Host Taxonomy
Assigned Host: Salmonella enterica (611)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain:
-
Biosample
Accession: 4156715 - GEOGRAPHICAL INFORMATION
- Original Query: Canada,Quebec
- Original Query Type: name
- Address: Canada,Quebec
- Coordinates (Lat/Lon): 52.48/-71.83
- ECOSYSTEM
- Original Query: turkey meat
- Classification: food,meat
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
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Reds
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Greens
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Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 6 of 6 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | KY014464 | MOBP | 17 | 101 | plus | 87.059 | 95 | 8.83e-18 | 95 |
| relaxase | NC_014003_00004 | MOBP | 750 | 2321 | plus | 92.817 | 100 | 0 | 920 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |