Plasmid CP134897.1

Sequence

Nucleotide Information

Accession CP134897.1
Description Escherichia coli strain 4080 plasmid pMB4926_6, complete sequence
Source insd
Topology circular
Length 3371 bp
GC Content 0.55 %
Created at NCBI Sept. 27, 2023



Assembly

Genome Data Information

Accession GCA_032053265.1
Assembly Coverage 197


Biosample

Curated Collection Information
Accession 32977769

PLASMID INFORMATION
Genotype ST196

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_AP022048.1 See Comparison
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NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP074040.1 See Comparison
AP026468.1 See Comparison
NZ_CP011944.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_AP027575.1 See Comparison
NC_011082.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP040320.1 See Comparison
NZ_CP129289.1 See Comparison
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NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_AP027481.1 See Comparison
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NZ_CP011841.1 See Comparison
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NZ_CP051414.1 See Comparison
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AP026468.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP069689.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP011944.1 See Comparison
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NC_011082.1 See Comparison
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NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
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NZ_AP027251.1 See Comparison
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NZ_CP133458.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
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NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_AP027481.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_CP011841.1 See Comparison
NZ_CP011844.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP051414.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP103760.1 See Comparison
NZ_CP074040.1 See Comparison
NZ_AP022297.1 See Comparison
AP026468.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore