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v. 2024_05_31_v2
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Typing
Plasmid CP134897.1
Sequence
Nucleotide Information
Accession
CP134897.1
Description
Escherichia coli strain 4080 plasmid pMB4926_6, complete sequence
Source
insd
Topology
circular
Length
3371 bp
GC Content
0.55 %
Created at NCBI
Sept. 27, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_032053265.1
Assembly Coverage
197
Biosample
Curated Collection Information
Accession
32977769
PLASMID INFORMATION
Genotype
ST196
GEOGRAPHICAL INFORMATION
Original Query
29.7068N;95.3971W
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.71/-95.40
Address
University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
bacteremia
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
CP134896.1
CP134895.1
CP134894.1
CP134893.1
CP134892.1
Similar Plasmids
based on Mash distance
NZ_CP058674.1
See Comparison
NZ_CP060993.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP069689.1
See Comparison
NZ_CP011944.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NC_011082.1
See Comparison
NZ_CP040653.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP128968.1
See Comparison
AP026468.1
See Comparison
NZ_AP027251.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_CP103760.1
See Comparison
NZ_CP074040.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_AP027575.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_AP022297.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP058674.1
See Comparison
NZ_CP040653.1
See Comparison
NZ_CP060993.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP069689.1
See Comparison
NZ_CP011944.1
See Comparison
NC_011082.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP128968.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_AP027251.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_AP027575.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_AP022297.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP103760.1
See Comparison
AP026468.1
See Comparison
NZ_CP074040.1
See Comparison
NZ_CP060993.1
See Comparison
NZ_CP058674.1
See Comparison
NC_011082.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP069689.1
See Comparison
NZ_CP011944.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NZ_CP128968.1
See Comparison
NZ_CP040653.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_AP027251.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_AP027575.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_AP022297.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP103760.1
See Comparison
AP026468.1
See Comparison
NZ_CP074040.1
See Comparison
NC_011082.1
See Comparison
NZ_CP058674.1
See Comparison
NZ_CP060993.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP069689.1
See Comparison
NZ_CP011944.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_CP040653.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP128968.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_AP027251.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_AP027575.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_AP022297.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP103760.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP058674.1
See Comparison
NZ_CP060993.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP074040.1
See Comparison
AP026468.1
See Comparison
NZ_CP011944.1
See Comparison
NZ_CP069689.1
See Comparison
NZ_AP027575.1
See Comparison
NC_011082.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP128968.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NZ_CP040653.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_AP027251.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_CP103760.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_AP022297.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP060993.1
See Comparison
NZ_CP074040.1
See Comparison
AP026468.1
See Comparison
NZ_CP058674.1
See Comparison
NZ_CP069689.1
See Comparison
CP082581.1
See Comparison
CP082675.1
See Comparison
NZ_CP053654.1
See Comparison
NZ_CP011944.1
See Comparison
NZ_CP040653.1
See Comparison
NC_011082.1
See Comparison
NZ_CP013225.1
See Comparison
NZ_CP013223.1
See Comparison
NZ_CP012934.1
See Comparison
NZ_CP012927.1
See Comparison
NZ_CP040320.1
See Comparison
NZ_AP027251.1
See Comparison
CP134897.1
See Comparison
NZ_CP129289.1
See Comparison
NZ_CP133458.1
See Comparison
NZ_CP128968.1
See Comparison
NZ_CP147041.1
See Comparison
NZ_CP149411.1
See Comparison
NZ_CP149414.1
See Comparison
NZ_AP027690.1
See Comparison
NZ_AP027608.1
See Comparison
NZ_AP027708.1
See Comparison
NZ_AP027540.1
See Comparison
NZ_AP027481.1
See Comparison
NZ_AP027575.1
See Comparison
NZ_CP011841.1
See Comparison
NZ_CP011844.1
See Comparison
NZ_CP051340.1
See Comparison
NZ_CP049080.1
See Comparison
NZ_CP051328.1
See Comparison
NZ_CP051414.1
See Comparison
NZ_CP060510.1
See Comparison
NZ_AP022048.1
See Comparison
NZ_CP117403.1
See Comparison
NZ_CP117393.1
See Comparison
NZ_CP104490.1
See Comparison
NZ_CP103760.1
See Comparison
NZ_CP074040.1
See Comparison
NZ_AP022297.1
See Comparison
AP026468.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore