Plasmid NZ_AP027481.1

Sequence

Nucleotide Information

Accession NZ_AP027481.1
Description Escherichia coli strain LR-17-1 plasmid pLR-17-1_2, complete sequence
Source refseq
Topology circular
Length 3371 bp
GC Content 0.55 %
Created at NCBI April 4, 2024



Assembly

Genome Data Information

Accession GCF_036494325.1
Assembly Coverage 101


Biosample

Curated Collection Information
Accession 38124446

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ecuador,Santo Domingo
Original Query Type name
Coordinates (Lat/Lon) -0.34/-79.17
Address Ecuador,Santo Domingo

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
CP082675.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027481.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP058674.1 See Comparison
CP082675.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP133458.1 See Comparison
CP134897.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_CP058674.1 See Comparison
CP082675.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_AP022297.1 See Comparison
CP134897.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP022048.1 See Comparison
CP082675.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP058674.1 See Comparison
CP134897.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
CP082675.1 See Comparison
NZ_CP133458.1 See Comparison
CP082675.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_CP133458.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore