Plasmid NZ_CP051401.1

Sequence

Nucleotide Information

Accession NZ_CP051401.1
Description Salmonella enterica subsp. enterica serovar Uganda strain CVM 22436 plasmid p22436-3, complete sequence
Source refseq
Topology circular
Length 3372 bp
GC Content 0.55 %
Created at NCBI Jan. 2, 2021



Assembly

Genome Data Information

Accession GCF_016454545.1
Assembly Coverage 354


Biosample

Curated Collection Information
Accession 14504594

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,AZ
Original Query Type name
Coordinates (Lat/Lon) 34.40/-111.76
Address USA,AZ

ECOSYSTEM
Original Query bovine
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NC_011082.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP060993.1 See Comparison
NZ_CP104490.1 See Comparison
CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP129289.1 See Comparison
NC_011082.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP051328.1 See Comparison
NC_011082.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP104490.1 See Comparison
NC_011082.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NC_011082.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
NZ_CP053654.1 See Comparison
NC_011082.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP027575.1 See Comparison
NZ_CP051401.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP060993.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore