Plasmid NZ_CP040320.1

Sequence

Nucleotide Information

Accession NZ_CP040320.1
Description Salmonella enterica subsp. enterica serovar Rough O:-:- strain PNCS009887 plasmid p11-0883.2, complete sequence
Source refseq
Topology circular
Length 3372 bp
GC Content 0.55 %
Created at NCBI May 23, 2019



Assembly

Genome Data Information

Accession GCF_005537135.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 6030095

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada
Original Query Type name
Coordinates (Lat/Lon) 61.07/-107.99
Address Canada

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP051340.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
AP026468.1 See Comparison
NZ_CP060993.1 See Comparison
NC_011082.1 See Comparison
NZ_CP058674.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP133458.1 See Comparison
CP134897.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP013225.1 See Comparison
AP026468.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
CP134897.1 See Comparison
NC_011082.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP058674.1 See Comparison
AP026468.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP053654.1 See Comparison
NC_011082.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
AP026468.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP069689.1 See Comparison
NC_011082.1 See Comparison
CP134897.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
AP026468.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_CP129289.1 See Comparison
NC_011082.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP117393.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP104490.1 See Comparison
AP026468.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP060993.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP069689.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP040653.1 See Comparison
NZ_CP040320.1 See Comparison
NC_011082.1 See Comparison
CP134897.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP051340.1 See Comparison
NZ_CP049080.1 See Comparison
NZ_CP051328.1 See Comparison
NZ_AP022048.1 See Comparison
NZ_CP104490.1 See Comparison
NZ_CP060510.1 See Comparison
NZ_AP022297.1 See Comparison
NZ_CP117403.1 See Comparison
NZ_CP117393.1 See Comparison
AP026468.1 See Comparison
NZ_CP060993.1 See Comparison
NZ_CP058674.1 See Comparison
NZ_CP069689.1 See Comparison
CP082581.1 See Comparison
CP082675.1 See Comparison
NZ_CP053654.1 See Comparison
NZ_CP133458.1 See Comparison
NZ_CP013225.1 See Comparison
NZ_CP013223.1 See Comparison
NZ_CP012934.1 See Comparison
NZ_CP012927.1 See Comparison
NC_011082.1 See Comparison
NZ_CP040653.1 See Comparison
CP134897.1 See Comparison
NZ_AP027251.1 See Comparison
NZ_CP129289.1 See Comparison
NZ_CP128968.1 See Comparison
NZ_CP149414.1 See Comparison
NZ_CP147041.1 See Comparison
NZ_CP149411.1 See Comparison
NZ_AP027608.1 See Comparison
NZ_AP027708.1 See Comparison
NZ_AP027540.1 See Comparison
NZ_CP049080.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2