Plasmid NZ_CP040653.1

Sequence

Nucleotide Information

Accession	NZ_CP040653.1
Description	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain SA20070548 plasmid pSA20070548.2, complete sequence
Source	refseq
Topology	circular
Length	3372 bp
GC Content	0.55 %
Created at NCBI	May 31, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (2583588)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_005890175.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	10833327

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Canada,Quebec
Original Query Type	name
Coordinates (Lat/Lon)	52.48/-71.83
Address	Canada,Quebec

ECOSYSTEM

Original Query	porcine
Classification	host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_CP040652.1

Similar Plasmids

based on Mash distance

NZ_AP027575.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
NZ_CP011841.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP117393.1	See Comparison
NZ_CP104490.1	See Comparison
AP026468.1	See Comparison
NZ_CP058674.1	See Comparison
NZ_CP060993.1	See Comparison
CP082581.1	See Comparison
CP082675.1	See Comparison
NZ_CP053654.1	See Comparison
NZ_CP040320.1	See Comparison
NZ_CP069689.1	See Comparison
NZ_CP011944.1	See Comparison
NC_011082.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP133458.1	See Comparison
CP134897.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_CP149414.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_AP027575.1	See Comparison
NZ_CP011841.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_CP117393.1	See Comparison
AP026468.1	See Comparison
NZ_CP104490.1	See Comparison
NZ_CP058674.1	See Comparison
NZ_CP060993.1	See Comparison
NZ_CP011944.1	See Comparison
CP082581.1	See Comparison
CP082675.1	See Comparison
NZ_CP053654.1	See Comparison
NZ_CP069689.1	See Comparison
NC_011082.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP133458.1	See Comparison
NZ_CP040653.1	See Comparison
NZ_CP040320.1	See Comparison
CP134897.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_CP149414.1	See Comparison
NZ_AP027575.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP011841.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_CP117393.1	See Comparison
NZ_CP053654.1	See Comparison
NZ_CP104490.1	See Comparison
NZ_CP058674.1	See Comparison
AP026468.1	See Comparison
NZ_CP060993.1	See Comparison
CP082581.1	See Comparison
CP082675.1	See Comparison
NC_011082.1	See Comparison
NZ_CP011944.1	See Comparison
NZ_CP069689.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP133458.1	See Comparison
NZ_CP040320.1	See Comparison
CP134897.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_CP149414.1	See Comparison
NZ_AP027575.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
AP026468.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP117393.1	See Comparison
NZ_CP011841.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP104490.1	See Comparison
NZ_CP058674.1	See Comparison
CP082675.1	See Comparison
NZ_CP060993.1	See Comparison
NZ_CP053654.1	See Comparison
CP082581.1	See Comparison
NC_011082.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP069689.1	See Comparison
NZ_CP011944.1	See Comparison
CP134897.1	See Comparison
NZ_CP040320.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_CP133458.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_CP011841.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP149414.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_AP027575.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
AP026468.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP104490.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP117393.1	See Comparison
CP082581.1	See Comparison
NZ_CP058674.1	See Comparison
NZ_CP060993.1	See Comparison
CP082675.1	See Comparison
NC_011082.1	See Comparison
NZ_CP053654.1	See Comparison
NZ_CP069689.1	See Comparison
NZ_CP011944.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP011841.1	See Comparison
CP134897.1	See Comparison
NZ_CP133458.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP149414.1	See Comparison
NZ_AP027575.1	See Comparison
NZ_AP027608.1	See Comparison
NZ_AP027708.1	See Comparison
NZ_AP027540.1	See Comparison
NZ_AP027481.1	See Comparison
NZ_CP040320.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_CP011844.1	See Comparison
NZ_CP104490.1	See Comparison
NZ_CP051340.1	See Comparison
NZ_CP051414.1	See Comparison
NZ_CP051328.1	See Comparison
NZ_CP060510.1	See Comparison
NZ_AP022297.1	See Comparison
NZ_AP022048.1	See Comparison
NZ_CP117403.1	See Comparison
NZ_CP117393.1	See Comparison
NZ_CP058674.1	See Comparison
AP026468.1	See Comparison
NZ_CP060993.1	See Comparison
CP082581.1	See Comparison
CP082675.1	See Comparison
NC_011082.1	See Comparison
NZ_CP053654.1	See Comparison
NZ_CP069689.1	See Comparison
NZ_CP011944.1	See Comparison
NZ_CP013225.1	See Comparison
NZ_CP013223.1	See Comparison
NZ_CP012934.1	See Comparison
NZ_CP012927.1	See Comparison
NZ_CP133458.1	See Comparison
NZ_CP040320.1	See Comparison
CP134897.1	See Comparison
NZ_AP027251.1	See Comparison
NZ_CP128968.1	See Comparison
NZ_CP129289.1	See Comparison
NZ_CP147041.1	See Comparison
NZ_CP149411.1	See Comparison
NZ_CP149414.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore