Plasmid NZ_AP017614.1

Sequence

Nucleotide Information

Accession NZ_AP017614.1
Description Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_4, complete sequence
Source refseq
Topology circular
Length 61805 bp
GC Content 0.42 %
Created at NCBI Sept. 27, 2017



Assembly

Genome Data Information

Accession GCF_002357915.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 6693586

PLASMID INFORMATION
BIOSAMPLE_rel_to_oxygen aerobic

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Sus scrofa
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_KY471309.1 See Comparison
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NZ_KY120366.1 See Comparison
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NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
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NZ_KU934208.1 See Comparison
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NZ_MW191864.1 See Comparison
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NZ_KY363998.1 See Comparison
NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_CP051226.1 See Comparison
NZ_MT929283.1 See Comparison
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NZ_CP116975.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_MN476095.1 See Comparison
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NZ_CP075719.1 See Comparison
NZ_CP041113.1 See Comparison
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NZ_CP047014.1 See Comparison
NZ_CP032081.1 See Comparison
NZ_AP018806.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP129275.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP134356.1 See Comparison
NZ_AP027636.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP126510.1 See Comparison
NZ_AP028820.1 See Comparison
NZ_AP027443.1 See Comparison
NZ_AP027402.1 See Comparison
NZ_AP027497.1 See Comparison
NZ_KX856067.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MN232214.1 See Comparison
NZ_MN232187.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MN232209.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_LC473131.1 See Comparison
NZ_LC469775.1 See Comparison
NZ_AP018412.1 See Comparison
NZ_MG598815.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH271383.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MH522409.1 See Comparison
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NZ_KY471309.1 See Comparison
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NZ_KX013538.1 See Comparison
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NZ_KY471308.1 See Comparison
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NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_MN476095.1 See Comparison
NZ_CP051226.1 See Comparison
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NZ_MT929290.1 See Comparison
NZ_MT929283.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_MN746291.1 See Comparison
AP027410.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_OP434482.1 See Comparison
NZ_MW191864.1 See Comparison
LC712384.1 See Comparison
LC712329.1 See Comparison
LC709173.1 See Comparison
LT174530.1 See Comparison
NZ_CP047014.1 See Comparison
NZ_CP032081.1 See Comparison
NZ_CP034405.1 See Comparison
NZ_CP041113.1 See Comparison
CP034400.1 See Comparison
NZ_AP018806.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP134356.1 See Comparison
NZ_CP129275.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_AP027443.1 See Comparison
NZ_AP027402.1 See Comparison
NZ_CP126510.1 See Comparison
NZ_AP028820.1 See Comparison
NZ_MN232187.1 See Comparison
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NZ_KX856068.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MN232214.1 See Comparison
NZ_MN232209.1 See Comparison
NZ_LC473131.1 See Comparison
NZ_LC469775.1 See Comparison
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NZ_MG598815.1 See Comparison
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NZ_KY795977.1 See Comparison
NZ_KY471309.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_CP051226.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KU934208.1 See Comparison
NZ_KY363994.1 See Comparison
NZ_KY363998.1 See Comparison
NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_MT929283.1 See Comparison
NZ_MN476095.1 See Comparison
NZ_MF069152.1 See Comparison
AP027410.1 See Comparison
NZ_MT929290.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_OP434482.1 See Comparison
NZ_MN746291.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_AP026909.1 See Comparison
LC712384.1 See Comparison
NZ_CP075719.1 See Comparison
LC712329.1 See Comparison
LC709173.1 See Comparison
NZ_CP034405.1 See Comparison
LT174530.1 See Comparison
NZ_CP041113.1 See Comparison
NZ_MW191864.1 See Comparison
NZ_CP047014.1 See Comparison
NZ_CP032081.1 See Comparison
CP034400.1 See Comparison
NZ_AP018806.1 See Comparison
NZ_CP129275.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP134356.1 See Comparison
NZ_KX856067.1 See Comparison
NZ_AP027443.1 See Comparison
NZ_AP027402.1 See Comparison
NZ_AP027636.1 See Comparison
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NZ_AP028820.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP126510.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_LC473131.1 See Comparison
NZ_MN232214.1 See Comparison
NZ_MN232209.1 See Comparison
NZ_MN232187.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_LC469775.1 See Comparison
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NZ_MK041211.1 See Comparison
NZ_MH522409.1 See Comparison
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NZ_MG598815.1 See Comparison
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NZ_KY471308.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KY471309.1 See Comparison
NZ_KY795977.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KU934208.1 See Comparison
NZ_CP051226.1 See Comparison
NZ_KY363994.1 See Comparison
NZ_KY363998.1 See Comparison
NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_MN476095.1 See Comparison
NZ_MF069152.1 See Comparison
AP027410.1 See Comparison
NZ_MT929290.1 See Comparison
NZ_MT929283.1 See Comparison
NZ_MN746291.1 See Comparison
NZ_MK852553.1 See Comparison
AP027406.1 See Comparison
NZ_CP116975.1 See Comparison
NZ_OP434482.1 See Comparison
LC712329.1 See Comparison
NZ_AP026909.1 See Comparison
LC709173.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP041113.1 See Comparison
NZ_MW191864.1 See Comparison
NZ_CP047014.1 See Comparison
NZ_CP032081.1 See Comparison
LC712384.1 See Comparison
LT174530.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP027443.1 See Comparison
NZ_AP017614.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_AP018806.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP134356.1 See Comparison
NZ_CP129275.1 See Comparison
NZ_AP027402.1 See Comparison
NZ_CP126510.1 See Comparison
NZ_KX856067.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_AP027636.1 See Comparison
NZ_AP027497.1 See Comparison
NZ_AP028820.1 See Comparison
NZ_MN232209.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MN232214.1 See Comparison
NZ_MN232187.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_AP018412.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_LC473131.1 See Comparison
NZ_LC469775.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MH522409.1 See Comparison
NZ_MH271383.1 See Comparison
NZ_MG594799.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_MG598815.1 See Comparison
NZ_KY795977.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KY471309.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MN476095.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KU934208.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KY363994.1 See Comparison
NZ_KY363998.1 See Comparison
NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_CP051226.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_CP116975.1 See Comparison
AP027410.1 See Comparison
AP027406.1 See Comparison
NZ_MT929290.1 See Comparison
NZ_MT929283.1 See Comparison
NZ_MN746291.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_OP434482.1 See Comparison
LC712384.1 See Comparison
NZ_AP026909.1 See Comparison
LC712329.1 See Comparison
LC709173.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_CP047014.1 See Comparison
NZ_MW191864.1 See Comparison
NZ_CP032081.1 See Comparison
LT174530.1 See Comparison
NZ_CP122512.1 See Comparison
NZ_CP041113.1 See Comparison
NZ_CP034405.1 See Comparison
CP034400.1 See Comparison
NZ_AP017619.1 See Comparison
NZ_AP017622.1 See Comparison
NZ_AP027443.1 See Comparison
NZ_AP027402.1 See Comparison
NZ_CP126510.1 See Comparison
NZ_AP018806.1 See Comparison
NZ_CP133929.1 See Comparison
NZ_CP134356.1 See Comparison
NZ_CP129275.1 See Comparison
NZ_KX856067.1 See Comparison
NZ_AP027636.1 See Comparison
NZ_AP027497.1 See Comparison
NZ_AP028820.1 See Comparison
NZ_KX856068.1 See Comparison
NZ_MN232214.1 See Comparison
NZ_MN232209.1 See Comparison
NZ_MG489944.1 See Comparison
NZ_MN232187.1 See Comparison
NZ_MG557851.1 See Comparison
NZ_MK041211.1 See Comparison
NZ_MH271383.1 See Comparison
NZ_LC473131.1 See Comparison
NZ_LC469775.1 See Comparison
NZ_AP018412.1 See Comparison
NZ_MH522410.1 See Comparison
NZ_MH522409.1 See Comparison
NZ_MG594799.1 See Comparison
NZ_MG594798.1 See Comparison
NZ_MG598815.1 See Comparison
NZ_KY471308.1 See Comparison
NZ_KY471311.1 See Comparison
NZ_KX013538.1 See Comparison
NZ_KY471309.1 See Comparison
NZ_KY120366.1 See Comparison
NZ_KY795977.1 See Comparison
NZ_KY471310.1 See Comparison
NZ_KU934208.1 See Comparison
NZ_MN476095.1 See Comparison
NZ_KY363994.1 See Comparison
NZ_KY363998.1 See Comparison
NZ_KY363996.1 See Comparison
NZ_KY363995.1 See Comparison
NZ_CP051226.1 See Comparison
NZ_MF069152.1 See Comparison
NZ_MN746291.1 See Comparison
NZ_MT929290.1 See Comparison
NZ_MT929283.1 See Comparison
NZ_MK852553.1 See Comparison
NZ_OP434482.1 See Comparison
AP027410.1 See Comparison
AP027406.1 See Comparison
NZ_AP026909.1 See Comparison
NZ_CP116975.1 See Comparison
LC712384.1 See Comparison
LC712329.1 See Comparison
LC709173.1 See Comparison
NZ_CP075719.1 See Comparison
NZ_MW191864.1 See Comparison
NZ_CP047014.1 See Comparison
NZ_CP032081.1 See Comparison
LT174530.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore