Plasmid OW969649.1

Sequence

Nucleotide Information

Accession OW969649.1
Description Klebsiella pneumoniae isolate 307 genome assembly, plasmid: P1
Source insd
Topology circular
Length 221878 bp
GC Content 0.52 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905333905.2
Assembly Coverage 317


Biosample

Curated Collection Information
Accession 22316942

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Ramon y Cajal (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusdfrA14copy
amrfinderplushsp20copy
amrfinderplusblaTEM-1copy
amrfinderpluspcoDcopy
amrfinderplusclpKcopy
amrfinderpluspcoScopy
amrfinderpluspcoRcopy
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
amrfinderplussilFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 253 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T169290171599minus99.35110001452
mate-pair-formationNC_019155_00032MPF_F174172177027minus92.4379901700
mate-pair-formationNC_019165_00034MPF_F177033178385minus95.344990797
mate-pair-formationNC_021654_00016MPF_F181279183240minus98.4719801243
mate-pair-formationNC_011281_00082MPF_F183293183937minus95.3491009.95e-125395
mate-pair-formationNC_022609_00081MPF_F184216185202minus95.1521000652
mate-pair-formationNC_014312_00128MPF_F185638186270minus99.0521004.46e-126398
mate-pair-formationNC_021502_00131MPF_T186662189298minus95.10810001736
mate-pair-formationNC_019389_00068MPF_F192072192587minus94.186893.73e-104335
mate-pair-formationNC_023332_00154MPF_F193268194689minus99.5781000791
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2