Plasmid CP104420.1

Sequence

Nucleotide Information

Accession	CP104420.1
Description	Shigella sonnei strain 1534306 plasmid p1534306_2, complete sequence
Source	insd
Topology	circular
Length	83397 bp
GC Content	0.53 %
Created at NCBI	Sept. 14, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella sonnei (624)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_sonnei (624)
Strain

Assembly

Genome Data Information

Accession	GCA_020986005.2
Assembly Coverage	256

Biosample

Curated Collection Information

Accession	23441105

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom,United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom,United Kingdom

ECOSYSTEM

Original Query	Homo sapiens,human
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP140622.1	See Comparison
LR861790.1	See Comparison
NZ_MW396858.1	See Comparison
NZ_OP038287.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP104422.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
NZ_OP038287.1	See Comparison
NZ_CP101110.2	See Comparison
CP102116.1	See Comparison
NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP140622.1	See Comparison
NZ_MW396858.1	See Comparison
LR861790.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP102116.1	See Comparison
CP104422.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
NZ_MW396858.1	See Comparison
NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP140622.1	See Comparison
NZ_CP101110.2	See Comparison
NZ_CP140622.1	See Comparison
NZ_CP101110.2	See Comparison
CP102116.1	See Comparison
LR861790.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_OP038287.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP104422.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP101110.2	See Comparison
NZ_MW396858.1	See Comparison
LR861790.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_OP038287.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP104422.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
NZ_CP140622.1	See Comparison
CP102116.1	See Comparison
NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_MW396858.1	See Comparison
LR861790.1	See Comparison
NZ_CP101110.2	See Comparison
NZ_OP038287.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP104422.1	See Comparison
CP104420.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
CP102116.1	See Comparison
NZ_OQ291176.1	See Comparison
NZ_OQ291178.1	See Comparison
NZ_CP140622.1	See Comparison
NZ_CP115395.1	See Comparison
NZ_MW396858.1	See Comparison
LR861790.1	See Comparison
NZ_OP038287.1	See Comparison
NZ_OP038290.1	See Comparison
CP104426.1	See Comparison
CP104422.1	See Comparison
CP104416.1	See Comparison
CP104412.1	See Comparison
CP104437.1	See Comparison
CP104433.1	See Comparison
NZ_CP101110.2	See Comparison
CP102116.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore