Plasmid NZ_OP038290.1

Sequence

Nucleotide Information

Accession NZ_OP038290.1
Description Shigella sonnei strain 202008564 plasmid p202008564-6, complete sequence
Source refseq
Topology circular
Length 83397 bp
GC Content 0.53 %
Created at NCBI Nov. 28, 2022





Similar Plasmids

based on Mash distance

NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP115395.1 See Comparison
LR861790.1 See Comparison
CP104426.1 See Comparison
NZ_OP038287.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
LR861790.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
CP104426.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_OP038287.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
CP104426.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP102116.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_CP115395.1 See Comparison
LR861790.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
NZ_OP038287.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
NZ_CP140622.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_MW396858.1 See Comparison
CP102116.1 See Comparison
NZ_CP101110.2 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
LR861790.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OP038287.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
LR861790.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
CP102116.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-27copy
amrfinderplusaadA5copy
amrfinderplusdfrA17copy
amrfinderpluserm(B)copy
rgimphAcopy
rgidfrA17copy
rgiErmBcopy
amrfinderplusqacEdelta1copy
rgiMrxcopy
amrfinderplusmph(A)copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 117 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAP014804MOBP4534245890plus99.81810001009
mate-pair-formationNC_022651_00077MPF_F4789748205plus99.029994.79e-63212
mate-pair-formationNC_010409_00124MPF_F4878349508plus97.9341006.52e-155483
mate-pair-formationNC_019094_00090MPF_F4951150920plus96.815970857
mate-pair-formationNC_017639_00094MPF_F5182252334plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T5397056585plus91.5149901648
mate-pair-formationNC_007675_00027MPF_F5697157600plus99.048973.79e-135424
mate-pair-formationNC_017639_00100MPF_F5760058556plus98.7461000605
mate-pair-formationNC_018966_00040MPF_F5898759571plus97.949924.29e-124393
mate-pair-formationNC_019094_00068MPF_F5957161418plus94.48110001144
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2