Plasmid NZ_CP101110.2

Sequence

Nucleotide Information

Accession NZ_CP101110.2
Description Shigella sonnei strain 132337 plasmid p20200414, complete sequence
Source refseq
Topology circular
Length 83398 bp
GC Content 0.53 %
Created at NCBI July 17, 2022



Biosample

Curated Collection Information
Accession 17304091

PLASMID INFORMATION
BIOSAMPLE_beta_lactamase_family CTX-M

GEOGRAPHICAL INFORMATION
Original Query Spain,Sevilla
Original Query Type name
Coordinates (Lat/Lon) 37.39/-6.00
Address Spain,Sevilla

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
NZ_CP140622.1 See Comparison
CP102116.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038290.1 See Comparison
CP102116.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_CP115395.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
CP102116.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
CP102116.1 See Comparison
NZ_MW396858.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore