Plasmid NZ_OQ291178.1

Sequence

Nucleotide Information

Accession NZ_OQ291178.1
Description Shigella sonnei strain SH280 plasmid pSH280, complete sequence
Source refseq
Topology circular
Length 84217 bp
GC Content 0.53 %
Created at NCBI May 2, 2023



Biosample

Curated Collection Information
Accession 30077609

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.428083N;2.142278E
Original Query Type coordinates
Coordinates (Lat/Lon) 41.43/2.14
Address Hospital Universitari Vall d'Hebron, Carrer de Natzaret, Montbau, Horta-Guinardó, Barcelona, Barcelonès, Barcelona, 08001, Spain

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query gatroenteritis
DOID/SYMP
  • Gastroenteritis (DOID:2326 )
    • A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_OQ291176.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_OP038287.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038290.1 See Comparison
CP102116.1 See Comparison
NZ_CP101110.2 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP140622.1 See Comparison
CP104426.1 See Comparison
NZ_CP115395.1 See Comparison
LR861790.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP115395.1 See Comparison
LR861790.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_MW396858.1 See Comparison
CP102116.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_CP140622.1 See Comparison
LR861790.1 See Comparison
NZ_MW396858.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_CP115395.1 See Comparison
LR861790.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
NZ_OQ291176.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
LR861790.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore