Plasmid CP104426.1

Sequence

Nucleotide Information

Accession CP104426.1
Description Shigella sonnei strain 1519755 plasmid p1519755_1, complete sequence
Source insd
Topology circular
Length 83416 bp
GC Content 0.53 %
Created at NCBI Sept. 14, 2022



Assembly

Genome Data Information

Accession GCA_020787955.2
Assembly Coverage 141


Biosample

Curated Collection Information
Accession 22962676

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom,United Kingdom

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
LR861790.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
CP104437.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104433.1 See Comparison
NZ_CP101110.2 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
NZ_OQ291176.1 See Comparison
CP102116.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104426.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OP038287.1 See Comparison
CP102116.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_OP038290.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP140622.1 See Comparison
LR861790.1 See Comparison
CP102116.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
LR861790.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_CP101110.2 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
LR861790.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_MW396858.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OP038290.1 See Comparison
NZ_CP101110.2 See Comparison
CP104422.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
CP102116.1 See Comparison
CP104422.1 See Comparison
NZ_MW396858.1 See Comparison
LR861790.1 See Comparison
NZ_CP115395.1 See Comparison
NZ_OQ291176.1 See Comparison
NZ_OQ291178.1 See Comparison
NZ_CP140622.1 See Comparison
NZ_OP038287.1 See Comparison
NZ_OP038290.1 See Comparison
CP104420.1 See Comparison
CP104416.1 See Comparison
CP104412.1 See Comparison
CP104437.1 See Comparison
CP104433.1 See Comparison
NZ_CP101110.2 See Comparison
CP102116.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiErmBcopy
rgiMrxcopy
amrfinderplusqacEdelta1copy
amrfinderplusmph(A)copy
amrfinderplussul1copy
amrfinderplusblaCTX-M-27copy
amrfinderplusaadA5copy
amrfinderplusdfrA17copy
rgidfrA17copy
rgimphAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 118 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017627_00068MOBF4200547272plus97.09610003343
mate-pair-formationNC_022651_00077MPF_F1683317141plus99.029994.79e-63212
mate-pair-formationNC_010409_00124MPF_F1771918444plus97.9341006.52e-155483
mate-pair-formationNC_019094_00090MPF_F1844719856plus96.815970857
mate-pair-formationNC_017639_00094MPF_F2075821270plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T2290625521plus91.5149901648
mate-pair-formationNC_007675_00027MPF_F2590726536plus99.048973.79e-135424
mate-pair-formationNC_017639_00100MPF_F2653627492plus98.7461000605
mate-pair-formationNC_018966_00040MPF_F2792328507plus97.949924.29e-124393
mate-pair-formationNC_019094_00068MPF_F2850730354plus94.48110001144
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2