Plasmid CP104418.1

Sequence

Nucleotide Information

Accession CP104418.1
Description Shigella sonnei strain 1534306 plasmid p1534306_1, complete sequence
Source insd
Topology circular
Length 86877 bp
GC Content 0.53 %
Created at NCBI Sept. 14, 2022



Assembly

Genome Data Information

Accession GCA_020986005.2
Assembly Coverage 256


Biosample

Curated Collection Information
Accession 23441105

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom,United Kingdom

ECOSYSTEM
Original Query Homo sapiens,human
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
CP102114.1 See Comparison
NZ_CP107288.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison
CP102114.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
CP102114.1 See Comparison
CP102114.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP107288.1 See Comparison
CP102114.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
CP102114.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore