Plasmid CP056980.1

Sequence

Nucleotide Information

Accession	CP056980.1
Description	Escherichia coli strain RHB41-C14 plasmid pRHB41-C14_7, complete sequence
Source	insd
Topology	circular
Length	4018 bp
GC Content	0.53 %
Created at NCBI	July 28, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_013802065.1
Assembly Coverage	173.996

Biosample

Curated Collection Information

Accession	15148426

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Pooled pig faecal samples collected from floor of farm
Classification	cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP051331.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP100675.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP092003.1	See Comparison
CP082689.1	See Comparison
NZ_CP058724.1	See Comparison
NZ_CP054983.1	See Comparison
NZ_CP084850.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_CP069688.1	See Comparison
CP057701.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP038606.1	See Comparison
NZ_OY754387.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP097850.1	See Comparison
NZ_CP141908.1	See Comparison
NZ_CP056379.1	See Comparison
CP056980.1	See Comparison
AP028488.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_CP043663.1	See Comparison
CP056629.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP051331.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP100675.1	See Comparison
CP082689.1	See Comparison
NZ_CP058724.1	See Comparison
NZ_CP054983.1	See Comparison
NZ_CP084850.1	See Comparison
NZ_CP092003.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_CP069688.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP038606.1	See Comparison
AP028488.1	See Comparison
NZ_OY754387.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP097850.1	See Comparison
CP056629.1	See Comparison
NZ_CP141908.1	See Comparison
NZ_CP056379.1	See Comparison
NZ_CP043663.1	See Comparison
CP057701.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP051331.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP100675.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP084850.1	See Comparison
NZ_CP092003.1	See Comparison
NZ_CP058724.1	See Comparison
NZ_CP054983.1	See Comparison
CP082689.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP069688.1	See Comparison
NZ_CP038606.1	See Comparison
NZ_OY754387.1	See Comparison
NZ_CP141908.1	See Comparison
AP028488.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP097850.1	See Comparison
CP057701.1	See Comparison
NZ_CP056379.1	See Comparison
CP056629.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP100675.1	See Comparison
NZ_CP043663.1	See Comparison
NZ_CP051331.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP084850.1	See Comparison
NZ_CP058724.1	See Comparison
NZ_CP092003.1	See Comparison
NZ_CP054983.1	See Comparison
CP082689.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP038606.1	See Comparison
NZ_OY754387.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP097850.1	See Comparison
NZ_CP056379.1	See Comparison
NZ_CP069688.1	See Comparison
AP028488.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP141908.1	See Comparison
CP057701.1	See Comparison
CP056629.1	See Comparison
NZ_CP043663.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP051331.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP100675.1	See Comparison
NZ_CP092003.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP084850.1	See Comparison
NZ_CP054983.1	See Comparison
NZ_CP058724.1	See Comparison
CP082689.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_OY754387.1	See Comparison
NZ_CP069688.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP038606.1	See Comparison
NZ_CP141908.1	See Comparison
AP028488.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP097850.1	See Comparison
NZ_CP056379.1	See Comparison
CP057701.1	See Comparison
CP056629.1	See Comparison
NZ_CP043663.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP113196.1	See Comparison
NZ_CP051331.1	See Comparison
NZ_CP064670.1	See Comparison
NZ_CP103736.1	See Comparison
NZ_CP091818.1	See Comparison
NZ_CP054983.1	See Comparison
NZ_CP092003.1	See Comparison
NZ_CP101863.1	See Comparison
NZ_CP100675.1	See Comparison
NZ_CP086227.1	See Comparison
NZ_CP039281.1	See Comparison
NZ_CP058724.1	See Comparison
NZ_CP082960.1	See Comparison
NZ_CP069688.1	See Comparison
NZ_CP084850.1	See Comparison
CP082689.1	See Comparison
NZ_CP038606.1	See Comparison
NZ_CP147117.1	See Comparison
NZ_OY754387.1	See Comparison
AP028488.1	See Comparison
NZ_CP117192.1	See Comparison
NZ_CP122466.1	See Comparison
NZ_CP122475.1	See Comparison
NZ_CP149971.1	See Comparison
NZ_CP097850.1	See Comparison
CP057701.1	See Comparison
NZ_CP097854.1	See Comparison
NZ_CP056379.1	See Comparison
CP056629.1	See Comparison
NZ_CP141908.1	See Comparison
NZ_CP019997.1	See Comparison
NZ_CP043663.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore