Plasmid NZ_CP038606.1

Sequence

Nucleotide Information

Accession NZ_CP038606.1
Description Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120 plasmid pGTAFD2016-MI-0253.2, complete sequence
Source refseq
Topology circular
Length 4018 bp
GC Content 0.53 %
Created at NCBI April 12, 2019



Assembly

Genome Data Information

Accession GCF_004768625.1
Assembly Coverage 60


Biosample

Curated Collection Information
Accession 10501887

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada
Original Query Type name
Coordinates (Lat/Lon) 61.07/-107.99
Address Canada

ECOSYSTEM
Original Query food
Classification food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP039281.1 See Comparison
NZ_OY754387.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP084850.1 See Comparison
CP082689.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP122466.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
CP056629.1 See Comparison
NZ_CP141908.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP084850.1 See Comparison
CP082689.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP147117.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP141908.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP058724.1 See Comparison
CP082689.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
AP028488.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP058724.1 See Comparison
AP028488.1 See Comparison
NZ_CP069688.1 See Comparison
CP082689.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP084850.1 See Comparison
CP082689.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP056980.1 See Comparison
CP057701.1 See Comparison
CP056629.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
CP082689.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP069688.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore