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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP038606.1
Sequence
Nucleotide Information
Accession
NZ_CP038606.1
Description
Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120 plasmid pGTAFD2016-MI-0253.2, complete sequence
Source
refseq
Topology
circular
Length
4018 bp
GC Content
0.53 %
Created at NCBI
April 12, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (28150)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_004768625.1
Assembly Coverage
60
Biosample
Curated Collection Information
Accession
10501887
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Canada
Original Query Type
name
Coordinates (Lat/Lon)
61.07/-107.99
Address
Canada
ECOSYSTEM
Original Query
food
Classification
food
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP038607.1
NZ_CP038605.1
Similar Plasmids
based on Mash distance
NZ_CP039281.1
See Comparison
NZ_OY754387.1
See Comparison
AP028488.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP122466.1
See Comparison
NZ_CP122475.1
See Comparison
NZ_CP147117.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP141908.1
See Comparison
NZ_CP056379.1
See Comparison
CP057701.1
See Comparison
CP056980.1
See Comparison
CP056629.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP064670.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP058724.1
See Comparison
NZ_CP054983.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP084850.1
See Comparison
CP082689.1
See Comparison
NZ_CP069688.1
See Comparison
NZ_CP039281.1
See Comparison
NZ_CP038606.1
See Comparison
NZ_OY754387.1
See Comparison
NZ_CP122466.1
See Comparison
AP028488.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP122475.1
See Comparison
NZ_CP147117.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP056379.1
See Comparison
CP056629.1
See Comparison
NZ_CP141908.1
See Comparison
CP057701.1
See Comparison
CP056980.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP064670.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP069688.1
See Comparison
NZ_CP058724.1
See Comparison
NZ_CP054983.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP084850.1
See Comparison
CP082689.1
See Comparison
NZ_OY754387.1
See Comparison
NZ_CP039281.1
See Comparison
NZ_CP147117.1
See Comparison
AP028488.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP122466.1
See Comparison
NZ_CP122475.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP056379.1
See Comparison
NZ_CP141908.1
See Comparison
CP057701.1
See Comparison
CP056980.1
See Comparison
CP056629.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP064670.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP084850.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP054983.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP058724.1
See Comparison
CP082689.1
See Comparison
NZ_CP069688.1
See Comparison
NZ_CP039281.1
See Comparison
AP028488.1
See Comparison
NZ_OY754387.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP122466.1
See Comparison
NZ_CP122475.1
See Comparison
NZ_CP141908.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP147117.1
See Comparison
NZ_CP056379.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP064670.1
See Comparison
CP057701.1
See Comparison
CP056980.1
See Comparison
CP056629.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP054983.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP084850.1
See Comparison
NZ_CP058724.1
See Comparison
AP028488.1
See Comparison
NZ_CP069688.1
See Comparison
CP082689.1
See Comparison
NZ_CP039281.1
See Comparison
NZ_OY754387.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP122466.1
See Comparison
NZ_CP122475.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP141908.1
See Comparison
NZ_CP056379.1
See Comparison
CP057701.1
See Comparison
CP056980.1
See Comparison
CP056629.1
See Comparison
NZ_CP147117.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP064670.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP058724.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP054983.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP069688.1
See Comparison
NZ_CP084850.1
See Comparison
CP082689.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP039281.1
See Comparison
NZ_OY754387.1
See Comparison
NZ_CP097854.1
See Comparison
NZ_CP122466.1
See Comparison
NZ_CP122475.1
See Comparison
AP028488.1
See Comparison
NZ_CP117192.1
See Comparison
NZ_CP147117.1
See Comparison
NZ_CP149971.1
See Comparison
NZ_CP097850.1
See Comparison
NZ_CP141908.1
See Comparison
NZ_CP056379.1
See Comparison
CP056980.1
See Comparison
CP057701.1
See Comparison
CP056629.1
See Comparison
NZ_CP051331.1
See Comparison
NZ_CP019997.1
See Comparison
NZ_CP043663.1
See Comparison
NZ_CP064670.1
See Comparison
NZ_CP113196.1
See Comparison
NZ_CP103736.1
See Comparison
NZ_CP091818.1
See Comparison
NZ_CP100675.1
See Comparison
NZ_CP101863.1
See Comparison
NZ_CP086227.1
See Comparison
NZ_CP092003.1
See Comparison
NZ_CP058724.1
See Comparison
NZ_CP054983.1
See Comparison
CP082689.1
See Comparison
NZ_CP084850.1
See Comparison
NZ_CP082960.1
See Comparison
NZ_CP069688.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore