Plasmid AP028488.1

Sequence

Nucleotide Information

Accession AP028488.1
Description Serratia marcescens CM5 plasmid pCM5_1 DNA, complete sequence
Source insd
Topology circular
Length 4018 bp
GC Content 0.53 %
Created at NCBI July 26, 2023



Assembly

Genome Data Information

Accession GCA_020884195.2
Assembly Coverage 86


Biosample

Curated Collection Information
Accession 22103705

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OY754387.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
CP082689.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
CP057701.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP069688.1 See Comparison
CP082689.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_CP117192.1 See Comparison
CP056980.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP056379.1 See Comparison
CP056629.1 See Comparison
NZ_CP103736.1 See Comparison
CP057701.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
CP082689.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP149971.1 See Comparison
CP056629.1 See Comparison
CP057701.1 See Comparison
NZ_CP019997.1 See Comparison
CP056980.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
CP082689.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP141908.1 See Comparison
CP056629.1 See Comparison
CP057701.1 See Comparison
NZ_CP043663.1 See Comparison
CP056980.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
CP082689.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
CP056629.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP019997.1 See Comparison
CP057701.1 See Comparison
NZ_CP043663.1 See Comparison
CP056980.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP092003.1 See Comparison
CP082689.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP084850.1 See Comparison
CP082689.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_CP069688.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2