Plasmid CP056983.1

Sequence

Nucleotide Information

Accession CP056983.1
Description Escherichia coli strain RHB41-C14 plasmid pRHB41-C14_10, complete sequence
Source insd
Topology circular
Length 1565 bp
GC Content 0.51 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013802065.1
Assembly Coverage 173.996


Biosample

Curated Collection Information
Accession 15148426

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP062217.1 See Comparison
CP098954.1 See Comparison
NZ_CP120556.1 See Comparison
CP100012.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_AP027586.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP148347.1 See Comparison
CP056906.1 See Comparison
NZ_KX009021.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP050377.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP120556.1 See Comparison
CP098954.1 See Comparison
CP100012.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_AP027586.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_KX009021.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_CP062217.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP050377.1 See Comparison
NZ_CP063466.1 See Comparison
CP098954.1 See Comparison
CP100012.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_CP050377.1 See Comparison
NZ_AP027586.1 See Comparison
CP056983.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_KX009021.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP063466.1 See Comparison
NZ_CP100510.1 See Comparison
CP098954.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_OW849068.1 See Comparison
CP100012.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_KX009021.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_AP027586.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP063466.1 See Comparison
CP056906.1 See Comparison
NZ_CP050377.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP120556.1 See Comparison
CP098954.1 See Comparison
CP100012.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP148347.1 See Comparison
CP056906.1 See Comparison
NZ_KX009021.1 See Comparison
NZ_AP027586.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP050377.1 See Comparison
NZ_CP058221.1 See Comparison
NZ_CP062217.1 See Comparison
NZ_CP120556.1 See Comparison
NZ_CP100510.1 See Comparison
NZ_CP063466.1 See Comparison
CP098954.1 See Comparison
CP100012.1 See Comparison
NZ_OW849068.1 See Comparison
NZ_CP029109.1 See Comparison
NZ_CP059129.1 See Comparison
NZ_CP075677.1 See Comparison
NZ_CP148516.1 See Comparison
NZ_CP027128.1 See Comparison
NZ_CP148347.1 See Comparison
NZ_KX009021.1 See Comparison
NZ_AP027586.1 See Comparison
NZ_CP063466.1 See Comparison
CP056906.1 See Comparison
CP056617.1 See Comparison
CP056612.1 See Comparison
NZ_CP050377.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore