Plasmid NZ_CP064670.1
Sequence
Nucleotide Information
| Accession | NZ_CP064670.1 |
|---|---|
| Description | Salmonella sp. SJTUF14154 plasmid p14154D, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4018 bp |
| GC Content | 0.53 % |
| Created at NCBI | Nov. 18, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella sp. SJTUF14154 (2745893) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_sp._SJTUF14154 (2745893) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15296096 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 37N;117E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 37.00/117.00 |
| Address | 哈叭沟村, Jinan, Shandong, China |
ECOSYSTEM
| Original Query | Chicken meat |
|---|---|
| Classification | food,meat |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | replication initiation protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 10 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 2945 | 3466 | minus | 89.564 | 99 | 0 | 652 |
| oriT | CP016722 | MOB_unknown | 3415 | 3593 | plus | 87.222 | 83 | 4.5e-50 | 204 |
| relaxase | NC_013090_00004 | MOBP | 1 | 1485 | plus | 91.717 | 99 | 0 | 897 |
| relaxase | NC_001848_00006 | MOBP | 3706 | 4017 | plus | 94.231 | 97 | 1.14e-59 | 203 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |