Plasmid NZ_CP141908.1

Sequence

Nucleotide Information

Accession NZ_CP141908.1
Description Klebsiella pneumoniae strain ST383 plasmid p4kb, complete sequence
Source refseq
Topology circular
Length 4018 bp
GC Content 0.53 %
Created at NCBI Jan. 17, 2024



Assembly

Genome Data Information

Accession GCF_035658215.1
Assembly Coverage 75


Biosample

Curated Collection Information
Accession 39239327

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 45.45342827N;10.98289984E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.45/10.98
Address Ospedale Civile Maggiore, 1, Piazzale Aristide Stefani, Borgo Trento, Nord-Ovest, Verona, Veneto, 37126, Italy

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
    • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
CP082689.1 See Comparison
NZ_CP069688.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP069688.1 See Comparison
AP028488.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
NZ_CP019997.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP038606.1 See Comparison
CP082689.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_OY754387.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP141908.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
NZ_CP043663.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP084850.1 See Comparison
CP082689.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP082960.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_OY754387.1 See Comparison
NZ_CP043663.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP039281.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
CP082689.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP038606.1 See Comparison
NZ_CP147117.1 See Comparison
NZ_OY754387.1 See Comparison
AP028488.1 See Comparison
NZ_CP117192.1 See Comparison
NZ_CP122466.1 See Comparison
NZ_CP122475.1 See Comparison
NZ_CP149971.1 See Comparison
NZ_CP097854.1 See Comparison
NZ_CP097850.1 See Comparison
NZ_CP056379.1 See Comparison
NZ_CP043663.1 See Comparison
CP057701.1 See Comparison
CP056980.1 See Comparison
CP056629.1 See Comparison
NZ_CP019997.1 See Comparison
NZ_CP051331.1 See Comparison
NZ_CP064670.1 See Comparison
NZ_CP113196.1 See Comparison
NZ_CP091818.1 See Comparison
NZ_CP103736.1 See Comparison
NZ_CP054983.1 See Comparison
NZ_CP086227.1 See Comparison
NZ_CP101863.1 See Comparison
NZ_CP100675.1 See Comparison
NZ_CP092003.1 See Comparison
NZ_CP058724.1 See Comparison
NZ_CP069688.1 See Comparison
NZ_CP084850.1 See Comparison
NZ_CP082960.1 See Comparison
CP082689.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore