PLSDB
v. 2024_05_31_v2
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Typing
Plasmid NZ_MK848866.1
Sequence
Nucleotide Information
Accession
NZ_MK848866.1
Description
Salmonella enterica subsp. enterica serovar Typhimurium strain W131 plasmid pYZPW131, complete sequence
Source
refseq
Topology
circular
Length
46161 bp
GC Content
0.47 %
Created at NCBI
June 4, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (90371)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Biosample
Curated Collection Information
Accession
14228976
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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NZ_CP110357.1
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CP110414.1
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NZ_CP106910.1
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NZ_CP103320.1
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LC716358.1
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NZ_CP048392.1
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LC744513.1
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LC744509.1
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LC744508.1
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LC744495.1
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NZ_ON209147.1
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NZ_ON209136.1
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NZ_CP106917.1
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NZ_CP104723.1
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NZ_CP101261.1
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NZ_OW967968.1
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NZ_CP095668.1
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NZ_MW191858.1
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CP043604.1
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CP090281.1
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CP090287.1
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CP090248.1
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CP084538.1
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LC521848.1
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NC_022740.1
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NZ_AP019679.1
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NZ_CP020512.1
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NZ_CP036312.1
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CP028705.1
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MG773377.1
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NZ_CP019073.1
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NZ_CP023188.1
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NZ_CP137171.1
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NZ_CP028536.2
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NZ_CP028718.1
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CP024820.1
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LC778279.1
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NZ_OQ230785.1
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LC807801.1
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LC807797.1
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NZ_CP139889.1
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CP142550.1
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LC789760.1
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LC789759.1
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LC789758.1
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LC789757.1
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NZ_CP139409.1
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NZ_CP139384.1
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NZ_CP059286.1
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NZ_MG833406.1
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NZ_MK088486.1
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NZ_CP050157.1
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NZ_MF679143.1
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CP040446.1
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NZ_AP023227.1
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MK715437.1
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CP071169.1
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NZ_LC218099.1
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NZ_MN017707.1
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NZ_CP102689.1
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CP117206.1
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LC744513.1
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LC744509.1
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LC744508.1
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NZ_ON209147.1
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NZ_ON209148.1
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CP110414.1
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NZ_CP106917.1
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NZ_CP106910.1
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NZ_CP104723.1
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NZ_LC545851.1
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NZ_CP117992.1
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LC744495.1
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LC744492.1
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LC744484.1
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LC744482.1
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LC744481.1
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NZ_ON209136.1
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NZ_ON209145.1
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NZ_ON209141.1
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NZ_ON209135.1
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NZ_CP110663.1
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NZ_CP110659.1
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NZ_CP101277.1
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NZ_CP099447.1
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LC716358.1
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NZ_CP048392.1
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NZ_OW967968.1
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NZ_CP081819.1
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NZ_CP096179.1
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NZ_CP097106.1
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CP090281.1
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CP090287.1
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CP090248.1
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NZ_MZ836803.1
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NZ_CP087572.1
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NZ_CP086289.1
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NZ_CP082124.1
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NZ_CP095678.1
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NZ_CP095668.1
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NZ_MW191858.1
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CP043604.1
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NZ_CP093286.1
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NZ_CP093230.1
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NZ_CP060982.1
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NZ_CP060901.1
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NZ_CP060888.1
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NZ_CP090459.1
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NZ_CP090451.1
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NZ_MW762473.1
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NZ_CP086339.1
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NZ_CP086341.1
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NZ_CP086557.1
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NZ_CP086343.1
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NZ_CP086335.1
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CP084538.1
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NZ_MW415442.1
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NZ_MW415443.1
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NZ_MW415444.1
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NZ_MW415441.1
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NZ_MW296100.1
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NZ_CP075887.1
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NZ_CP073363.1
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NZ_CP047006.1
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LC521848.1
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NZ_CP054412.1
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NZ_CP054409.1
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NZ_CP021759.1
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NZ_CP021738.1
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NZ_CP021692.1
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NZ_CP021534.1
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NZ_CP012990.1
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NZ_CP014006.1
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NC_022740.1
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NZ_AP019679.1
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NZ_CP020512.1
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NZ_CP043333.1
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NZ_CP036312.1
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NZ_CP036179.1
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NZ_CP036205.1
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NZ_CP156720.1
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NZ_CP034957.1
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NZ_CP034965.1
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NZ_CP035125.1
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NZ_CP032424.1
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NZ_CP026577.2
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NZ_CP028577.1
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NZ_CP024833.1
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NZ_CP024814.1
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NZ_CP024825.1
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NZ_CP024818.1
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NZ_CP023188.1
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NZ_CP022351.1
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NZ_CP137171.1
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NZ_CP138483.1
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NZ_CP137857.1
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NZ_OR233056.1
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NZ_OR233059.1
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NZ_OR233057.1
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NZ_OR233060.1
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NZ_CP095685.1
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LC778279.1
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NZ_CP123590.1
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NZ_OQ230789.1
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NZ_OQ230790.1
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NZ_CP123242.1
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NZ_CP072470.1
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NZ_CP034744.1
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NZ_CP034591.1
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NZ_CP033057.1
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NZ_CP033399.1
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NZ_CP028536.2
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NZ_CP032889.1
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NZ_CP031725.1
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NZ_CP031138.1
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CP028705.1
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NZ_CP029245.1
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MG773377.1
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NZ_CP028718.1
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NZ_CP025948.1
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NZ_CP019073.1
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CP024820.1
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NZ_CP137438.1
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NZ_OR233061.1
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NZ_OR395175.1
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NZ_OR095749.1
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NZ_CP130677.1
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NZ_OQ230785.1
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NZ_CP093461.1
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NZ_CP155693.1
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NZ_CP123049.1
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NZ_MK033579.1
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NZ_CP156940.1
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NZ_CP150626.1
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NZ_CP149843.1
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NZ_CP149970.1
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LC807801.1
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LC807797.1
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NZ_CP139893.1
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CP142550.1
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NZ_CP142039.1
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NZ_CP141747.1
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NZ_CP139491.1
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NZ_CP139407.1
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LC789760.1
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LC789759.1
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LC789758.1
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LC789757.1
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NZ_CP139409.1
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NZ_CP139378.1
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NZ_CP139384.1
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NZ_CP050157.1
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NZ_MF679143.1
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NZ_CP059006.1
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CP040446.1
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NZ_AP023227.1
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NZ_AP023194.1
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NZ_AP023210.1
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NZ_MN064714.1
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NZ_MK773535.1
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NZ_MK618661.1
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NZ_MK628734.1
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CP110414.1
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CP117206.1
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LC716358.1
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NC_022740.1
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LC521848.1
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MG773377.1
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CP028705.1
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CP142550.1
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CP040446.1
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CP071169.1
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LC744446.1
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CP117206.1
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LC744513.1
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LC744509.1
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LC744508.1
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LC744495.1
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LC744492.1
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LC744437.1
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LC744482.1
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CP110414.1
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LC744478.1
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LC744460.1
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LC716358.1
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CP043604.1
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CP090281.1
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CP090287.1
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CP090248.1
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NC_022740.1
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NZ_MT621568.1
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NZ_MT621567.1
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NZ_MT621563.1
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NZ_MT621565.1
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NZ_MT621566.1
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NZ_MT621564.1
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NZ_MT621562.1
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NZ_MT621561.1
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NZ_CP091474.2
See Comparison
NZ_CP060966.1
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NZ_CP060976.1
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NZ_CP060972.1
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NZ_CP092975.1
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NZ_CP060883.1
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NZ_CP060911.1
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NZ_CP060876.1
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NZ_CP060931.1
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NZ_CP060905.1
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NZ_CP092650.1
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NZ_CP054273.1
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NZ_CP090459.1
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NZ_CP090451.1
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NZ_CP087572.1
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NZ_CP086339.1
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NZ_CP086341.1
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NZ_CP086557.1
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NZ_CP086343.1
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NZ_CP086335.1
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NZ_CP086337.1
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CP084538.1
See Comparison
NZ_MW296100.1
See Comparison
NZ_CP054409.1
See Comparison
NZ_CP075887.1
See Comparison
NZ_CP073363.1
See Comparison
NZ_CP047006.1
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LC521848.1
See Comparison
NZ_CP072470.1
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NZ_CP021759.1
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NZ_CP021738.1
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NZ_CP021692.1
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NZ_CP021534.1
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NZ_CP012990.1
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NZ_CP014006.1
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NZ_CP095568.1
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NZ_CP095614.1
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NZ_CP043333.1
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NZ_CP020512.1
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NZ_CP036312.1
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NZ_CP036205.1
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NZ_CP036179.1
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NZ_CP034957.1
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NZ_CP034965.1
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NZ_CP035125.1
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CP028705.1
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NZ_CP034744.1
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NZ_CP034591.1
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NZ_CP033057.1
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NZ_CP033399.1
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NZ_CP028536.2
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NZ_CP032889.1
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NZ_CP032424.1
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NZ_CP031725.1
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NZ_CP031138.1
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NZ_CP026577.2
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MG773377.1
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NZ_CP028718.1
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NZ_CP028577.1
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NZ_CP019073.1
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NZ_CP024833.1
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NZ_CP024814.1
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NZ_CP023188.1
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NZ_CP022351.1
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NZ_CP137171.1
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NZ_CP138483.1
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NZ_CP137857.1
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NZ_CP137438.1
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NZ_OR233056.1
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NZ_OR233059.1
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NZ_OR233057.1
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NZ_OR233060.1
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NZ_OR233054.1
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NZ_OR233061.1
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LC778279.1
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NZ_CP123590.1
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NZ_CP130677.1
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NZ_CP123242.1
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NZ_CP123264.1
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NZ_CP093504.1
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NZ_CP093473.1
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NZ_CP093461.1
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NZ_CP155693.1
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NZ_CP150626.1
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NZ_CP139889.1
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NZ_CP139893.1
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NZ_CP141672.1
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NZ_CP059286.1
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NZ_MG833406.1
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NZ_MK088486.1
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NZ_CP050157.1
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NZ_AP019679.1
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NZ_CP025948.1
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NZ_CP024825.1
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NZ_CP024818.1
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CP024820.1
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NZ_OR395175.1
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NZ_OR095749.1
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NZ_CP095685.1
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NZ_OQ230785.1
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NZ_OQ230784.1
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NZ_OQ230789.1
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NZ_OQ230790.1
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NZ_CP123049.1
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NZ_CP156940.1
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NZ_CP156720.1
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NZ_CP149843.1
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NZ_CP149970.1
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LC807801.1
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LC807797.1
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NZ_CP143343.1
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CP142550.1
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NZ_CP142039.1
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NZ_CP141747.1
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NZ_CP139491.1
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NZ_CP139407.1
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LC789760.1
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LC789759.1
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LC789758.1
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LC789757.1
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NZ_CP139409.1
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NZ_CP139378.1
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NZ_CP139384.1
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NZ_MF679143.1
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NZ_CP029245.1
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NZ_CP059006.1
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NZ_MK372389.1
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CP040446.1
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NZ_AP023227.1
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NZ_AP023194.1
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NZ_AP023210.1
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NZ_AP023202.1
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NZ_MN064714.1
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NZ_MK773535.1
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NZ_MK618661.1
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NZ_MK628734.1
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NZ_MK256964.1
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NZ_MK372393.1
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NZ_MH781720.1
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NZ_MK450346.1
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NZ_MH341575.1
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NZ_MK372390.1
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NZ_MH234500.1
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NZ_MH234508.1
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NZ_MK372388.1
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NZ_MH234504.1
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NZ_MK372391.1
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NZ_MH161191.1
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NZ_MH286950.1
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NZ_MH286952.1
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NZ_MH234501.1
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NZ_MK317995.1
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NZ_MH347484.1
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NZ_MH286947.1
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NZ_MH234498.1
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NZ_MH234509.1
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NZ_MH286949.1
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NZ_MH917280.1
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NZ_MH234497.1
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NZ_MH234499.1
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NZ_MH500845.1
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NZ_MK033578.1
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NZ_MH286951.1
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NZ_MH286946.1
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NZ_MK033581.1
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NZ_MH234507.1
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NZ_MK033584.1
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NZ_MK033580.1
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NZ_MK033582.1
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NZ_MK033583.1
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NZ_MK033577.1
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NZ_MK033579.1
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NZ_MH523639.1
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NZ_MH234506.1
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NZ_MH286945.1
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NZ_MH061381.1
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NZ_MH094148.1
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NZ_MG591703.1
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NZ_MH286948.1
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NZ_MG545911.1
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NZ_MF547508.1
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NZ_MH328008.1
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NZ_MF547511.1
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NZ_MG825368.1
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NZ_MF547507.1
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NZ_MF547510.1
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NZ_MG825382.1
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NZ_MG825384.1
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NZ_MF458176.1
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NZ_MG252891.1
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NZ_MH234503.1
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NZ_MH234502.1
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NZ_MF547509.1
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NZ_KX470735.1
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NZ_KY435936.1
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NZ_KX674681.1
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NZ_KX833071.1
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NZ_KX214669.1
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NZ_KU167609.1
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NZ_KY041843.1
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NZ_KM400601.1
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NZ_KU167608.1
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NZ_KP776609.1
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NZ_KT824791.1
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NZ_CP051221.1
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NZ_AP018141.1
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NZ_AP018146.1
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NZ_CP071396.1
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NZ_CP049602.1
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NZ_CP049352.1
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NZ_CP048028.1
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MK715437.1
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CP071169.1
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NZ_CP070422.1
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NZ_CP070442.1
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NZ_CP070456.1
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NZ_MW218142.1
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NZ_LC218099.1
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NZ_AP024206.1
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NZ_CP065346.1
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NZ_MT663954.1
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NZ_MK757468.1
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NZ_CP065350.1
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NZ_MK262709.1
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NZ_CP064177.1
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NZ_MT901553.1
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NZ_MT074091.1
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NZ_CP061747.1
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NZ_MN017707.1
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NZ_MN092230.1
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NZ_KX507346.1
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NZ_KX023261.1
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NZ_MT129534.1
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NZ_MN865121.1
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NZ_MN276082.1
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NZ_MN175389.1
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NZ_MN276078.1
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NZ_MK986791.1
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NZ_CP117992.1
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LC744446.1
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LC744437.1
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CP110414.1
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NZ_CP106917.1
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NZ_CP106910.1
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NZ_ON461804.1
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NZ_CP103320.1
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NZ_CP096179.1
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NZ_CP101238.1
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NZ_CP101273.1
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NZ_CP101249.1
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NZ_CP101243.1
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NZ_CP101255.1
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NZ_CP101277.1
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NZ_CP099447.1
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LC716358.1
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NZ_CP048392.1
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NZ_AP022249.1
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NZ_CP059715.1
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NZ_MN276080.1
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NZ_MN276081.1
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NZ_MN276079.1
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NZ_MN565271.1
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NZ_MN335922.1
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NZ_MN701974.1
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NZ_MN701975.1
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NZ_LC545851.1
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NZ_LC536680.1
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NZ_CP102689.1
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NZ_CP101837.1
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CP117206.1
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LC744513.1
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LC744509.1
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LC744508.1
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LC744495.1
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LC744492.1
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LC744484.1
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LC744482.1
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LC744481.1
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LC744478.1
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LC744460.1
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NZ_ON209147.1
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NZ_ON209148.1
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NZ_ON209136.1
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NZ_ON209149.1
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NZ_ON209144.1
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NZ_ON209145.1
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NZ_ON209141.1
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NZ_ON209135.1
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NZ_ON209140.1
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NZ_CP110663.1
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NZ_CP110659.1
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NZ_CP110357.1
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NZ_ON023484.1
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NZ_OM791348.1
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NZ_CP104723.1
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NZ_CP102900.1
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NZ_CP102924.1
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NZ_CP102892.1
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NZ_CP102896.1
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NZ_CP102875.1
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NZ_CP102890.1
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NZ_CP102905.1
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NZ_CP101868.1
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NZ_CP101261.1
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NZ_OW967968.1
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NZ_CP081819.1
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NZ_CP097106.1
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NZ_CP095678.1
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NZ_CP086225.1
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NZ_CP095617.1
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NZ_CP095640.1
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NZ_CP095587.1
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NZ_CP095642.1
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NZ_CP095568.1
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NZ_CP095614.1
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NZ_CP095668.1
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NZ_CP095675.1
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NZ_MW191858.1
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CP043604.1
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NZ_CP043586.1
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NZ_CP043591.1
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NZ_MT621568.1
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NZ_MT621567.1
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NZ_MT621563.1
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NZ_MT621565.1
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NZ_MT621566.1
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NZ_MT621564.1
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NZ_MT621562.1
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NZ_MT621561.1
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NZ_CP091474.2
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NZ_CP060976.1
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NZ_CP060972.1
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NZ_CP093286.1
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NZ_CP092975.1
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NZ_CP093230.1
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NZ_CP060883.1
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NZ_CP060982.1
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NZ_CP060911.1
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NZ_CP060876.1
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NZ_CP060966.1
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NZ_CP060931.1
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NZ_CP060905.1
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NZ_CP043281.1
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NZ_CP060888.1
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NZ_CP060901.1
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NZ_CP043287.1
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NZ_CP092650.1
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NZ_CP090459.1
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NZ_KU761328.1
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NZ_CP090451.1
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NZ_CP054130.1
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NZ_MW762473.1
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NZ_CP054273.1
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NZ_CP089987.1
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CP090281.1
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CP090287.1
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CP090248.1
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NZ_MZ836800.1
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NZ_MZ836803.1
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NZ_MZ836806.1
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NZ_MZ836804.1
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NZ_CP087572.1
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NZ_CP086339.1
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NZ_CP086341.1
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NZ_CP086557.1
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NZ_CP086343.1
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NZ_CP086335.1
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NZ_CP086337.1
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NZ_CP086289.1
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CP084538.1
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NZ_MW415443.1
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NZ_MZ270636.1
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NZ_CP082124.1
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NZ_MW415444.1
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NZ_MW415441.1
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NZ_CP054412.1
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NZ_MW415442.1
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NZ_MW415440.1
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NZ_MW296100.1
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NZ_CP075887.1
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NZ_CP047006.1
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LC521848.1
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NZ_CP072470.1
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NZ_CP021759.1
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NZ_CP021738.1
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NZ_CP021692.1
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NZ_CP021534.1
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NZ_CP073363.1
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NZ_CP054409.1
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NZ_CP012990.1
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NZ_CP014006.1
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NZ_CP032424.1
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NC_022740.1
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NZ_AP019679.1
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NZ_CP020512.1
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NZ_CP036312.1
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NZ_CP036205.1
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NZ_CP034957.1
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NZ_CP033057.1
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NZ_CP028536.2
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NZ_CP032889.1
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NZ_CP043333.1
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NZ_CP036179.1
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NZ_CP034965.1
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NZ_CP035125.1
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NZ_CP034744.1
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NZ_CP034591.1
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NZ_CP033399.1
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NZ_CP031138.1
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NZ_CP031725.1
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NZ_CP026577.2
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MG773377.1
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CP028705.1
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NZ_CP022351.1
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NZ_CP028718.1
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NZ_CP028577.1
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NZ_CP019073.1
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NZ_CP024814.1
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NZ_CP024825.1
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NZ_CP023188.1
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NZ_CP029245.1
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NZ_CP025948.1
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NZ_CP024833.1
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NZ_CP024818.1
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CP024820.1
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NZ_OR233061.1
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NZ_CP138483.1
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NZ_CP137438.1
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NZ_CP137171.1
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NZ_CP137857.1
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NZ_OR233059.1
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NZ_OR233057.1
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NZ_CP123590.1
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NZ_OR233060.1
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NZ_OR233054.1
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NZ_OR395175.1
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NZ_CP095685.1
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LC778279.1
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NZ_OR233056.1
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NZ_OR095749.1
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NZ_CP130677.1
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Identical Plasmids
100% Sequence Identity
NZ_MH234506.1
Sequence
Accession
:
NZ_MH234506.1
Description
: Enterobacter cloacae strain CRE3473 plasmid pNDM-HK3473, complete sequence
Source
: refseq
Created at NCBI
: June 3, 2020
Host Taxonomy
Assigned Host
:
Enterobacter cloacae (550)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_cloacae (550)
Strain
:
Biosample
Accession
:
14228216
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_MF547508.1
Sequence
Accession
:
NZ_MF547508.1
Description
: Escherichia coli strain P855MEM plasmid pP855-NDM5, complete sequence
Source
: refseq
Created at NCBI
: June 3, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
14227627
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
LC789760.1
Sequence
Accession
:
LC789760.1
Description
: Escherichia coli JBBEABG-19-0025 plasmid pJBBEABG-19-0025 DNA, complete sequence
Source
: insd
Created at NCBI
: Dec. 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34365782
GEOGRAPHICAL INFORMATION
Original Query
: 35.447693N;139.642579E
Original Query Type
: coordinates
Address
: King's Tower (Yokohama Three Towers), Minato-Odori Avenue, Motohamacho 1-chome, Naka Ward, Yokohama, Kanagawa Prefecture, 231-0017, Japan
Coordinates
(Lat/Lon): 35.45/139.64
ECOSYSTEM
Original Query
: Homo sapiens,pharyngeal mucus
Classification
: host_associated,mucus,respiratory_system
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore