Plasmid NZ_MW415441.1
Sequence
Nucleotide Information
| Accession | NZ_MW415441.1 |
|---|---|
| Description | Escherichia coli strain DMCPEC3 plasmid pEC3-NDM-5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 45805 bp |
| GC Content | 0.47 % |
| Created at NCBI | Aug. 30, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 17140837 |
|---|
PLASMID INFORMATION
| Genotype | ST410 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | 37.46N;126.95E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 37.46/126.95 |
| Address | Seoul National University Gwanak Campus, 1, Gwanak-ro, Seorim-dong, Gwanak-gu, Seoul, 08826, South Korea |
ECOSYSTEM
| Original Query | Canis lupus labrador retriever,ear swab |
|---|---|
| Classification | auditory_system,host_associated |
| Host-associated Taxon |
|
| Host-associated Age | 7 Years old |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| NUCCORE ACC | Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|---|
| NUCCORE ACC | Source | Element Name | Display | Sequence | Favorite |
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Contigs | md5 hash | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Rank | Observed Host Range Ncbi Name | Mash Nearest Neighbor | Mash Neighbor Distance | Mash Neighbor Identification | Reported Host Range Lit Rank | Reported Host Range Lit Name | Replicon Type Accession | Relaxase Type Accession | MPF Type Accession | OriT Type Accession | Associated PMID(s) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NUCCORE ACC | Contigs | md5 hash | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Rank | Observed Host Range Ncbi Name | Mash Nearest Neighbor | Mash Neighbor Distance | Mash Neighbor Identification | Reported Host Range Lit Rank | Reported Host Range Lit Name | Replicon Type Accession | Relaxase Type Accession | MPF Type Accession | OriT Type Accession | Associated PMID(s) |
BLAST results of detected typing markers by MOB-type
| NUCCORE ACC | biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|---|
| NUCCORE ACC | biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | HSP length | Template length | Position in ref | Positions in Contig | Note | Accession | Hit id | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | HSP length | Template length | Position in ref | Positions in Contig | Note | Accession | Hit id | Organism L1 | Organism L2 |