Plasmid NZ_CP023188.1
Sequence
Nucleotide Information
| Accession | NZ_CP023188.1 |
|---|---|
| Description | Klebsiella michiganensis strain K518 plasmid pK518_NDM5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 46146 bp |
| GC Content | 0.47 % |
| Created at NCBI | Sept. 14, 2017 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella michiganensis (1134687) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_michiganensis (1134687) |
| Strain |
Biosample
Curated Collection Information
| Accession | 7551913 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 30.26N;120.19E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 30.26/120.19 |
| Address | Qingchun Road (East), 采荷, Caihe, Shangcheng District, Hangzhou City, Zhejiang, 310016, China |
ECOSYSTEM
| Original Query | patient,China: The First Affiliated Hospital of Zhejiang University |
|---|---|
| Classification | host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | acute leukemia, pneumonia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | ble | copy | ||
| amrfinderplus | blaNDM-5 | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | lytic transglycosylase domain-containing protein | copy | ||
| PGAG | TrbC/VirB2 family protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | EexN family lipoprotein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | TrbG/VirB9 family P-type conjugative transfer protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 62 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_023277_00163 | MPF_T | 3830 | 4978 | plus | 92.689 | 100 | 0 | 741 |
| mate-pair-formation | NC_019157_00029 | MPF_T | 6040 | 7092 | plus | 100 | 100 | 0 | 645 |
| mate-pair-formation | NC_019157_00030 | MPF_T | 7290 | 8015 | plus | 100 | 100 | 1.21e-145 | 456 |
| mate-pair-formation | NC_019083_00030 | MPF_T | 8024 | 8950 | plus | 98.706 | 100 | 0 | 630 |
| mate-pair-formation | NC_017624_00009 | MPF_T | 11397 | 13193 | plus | 95.159 | 98 | 0 | 1123 |
| replicon | 000221__NC_025130_00012 | IncX3 | 39080 | 39952 | minus | 100 | 100 | 0 | 1613 |
| relaxase | CP045055_00041 | MOBP | 45191 | 46144 | plus | 94.34 | 82 | 0 | 625 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |