Plasmid NZ_CP093461.1

Sequence

Nucleotide Information

Accession NZ_CP093461.1
Description Klebsiella pneumoniae strain VA684 plasmid pVA684-49, complete sequence
Source refseq
Topology circular
Length 48523 bp
GC Content 0.47 %
Created at NCBI May 24, 2023



Assembly

Genome Data Information

Accession GCF_030061645.1
Assembly Coverage 195


Biosample

Curated Collection Information

Accession 26642722

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Chile,Metropolitan Region
Original Query Type name
Coordinates (Lat/Lon) -33.58/-70.70
Address Chile,Metropolitan Region

ECOSYSTEM
Original Query Homo sapiens,Isolated from catheter blood of an 15 years old female
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 15
Host-associated Sex female

DISEASE
Original Query Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
  • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization




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based on Mash distance

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NZ_CP082124.1 See Comparison
NZ_CP021759.1 See Comparison
NZ_CP021692.1 See Comparison
NZ_CP021534.1 See Comparison
NZ_CP060901.1 See Comparison
NZ_CP043281.1 See Comparison
NZ_CP060888.1 See Comparison
NZ_CP036312.1 See Comparison
NZ_CP012990.1 See Comparison
NC_022740.1 See Comparison
NZ_AP019679.1 See Comparison
NZ_CP014006.1 See Comparison
NZ_CP031725.1 See Comparison
NZ_CP034957.1 See Comparison
NZ_CP034965.1 See Comparison
NZ_CP035125.1 See Comparison
NZ_CP033399.1 See Comparison
NZ_CP031138.1 See Comparison
NZ_CP034744.1 See Comparison
NZ_CP032889.1 See Comparison
NZ_CP032424.1 See Comparison
NZ_CP028718.1 See Comparison
NZ_CP026577.2 See Comparison
NZ_CP028577.1 See Comparison
LC778279.1 See Comparison
NZ_OR233059.1 See Comparison
CP028705.1 See Comparison
NZ_CP024833.1 See Comparison
NZ_CP024825.1 See Comparison
NZ_CP024818.1 See Comparison
CP024820.1 See Comparison
NZ_CP137438.1 See Comparison
NZ_OQ230784.1 See Comparison
NZ_CP123242.1 See Comparison
NZ_KX214669.1 See Comparison
NZ_CP123049.1 See Comparison
NZ_CP139889.1 See Comparison
NZ_CP139893.1 See Comparison
NZ_CP142039.1 See Comparison
NZ_CP141672.1 See Comparison
NZ_CP139491.1 See Comparison
LC789760.1 See Comparison
LC789759.1 See Comparison
LC789758.1 See Comparison
LC789757.1 See Comparison
NZ_CP139378.1 See Comparison
NZ_CP139384.1 See Comparison
CP040446.1 See Comparison
NZ_AP023210.1 See Comparison
NZ_MK848866.1 See Comparison
NZ_MN064714.1 See Comparison
NZ_MK618661.1 See Comparison
NZ_MK628734.1 See Comparison
NZ_MK372390.1 See Comparison
NZ_MK372389.1 See Comparison
NZ_MK256964.1 See Comparison
NZ_MH341575.1 See Comparison
NZ_MH234500.1 See Comparison
NZ_MH234508.1 See Comparison
NZ_MH161191.1 See Comparison
NZ_MK317995.1 See Comparison
NZ_MH286947.1 See Comparison
NZ_MH500845.1 See Comparison
NZ_MH234507.1 See Comparison
NZ_MH234498.1 See Comparison
NZ_MH234497.1 See Comparison
NZ_MK033581.1 See Comparison
NZ_MK033584.1 See Comparison
NZ_MK033582.1 See Comparison
NZ_MK033577.1 See Comparison
NZ_MH523639.1 See Comparison
NZ_MH286945.1 See Comparison
NZ_MH286948.1 See Comparison
NZ_MH234506.1 See Comparison
NZ_MF547508.1 See Comparison
NZ_MF547507.1 See Comparison
NZ_MG825384.1 See Comparison
NZ_MF547510.1 See Comparison
NZ_MF547509.1 See Comparison
NZ_MH234503.1 See Comparison
NZ_CP093504.1 See Comparison
NZ_CP093473.1 See Comparison
NZ_MW218142.1 See Comparison
NZ_KX470735.1 See Comparison
NZ_KM400601.1 See Comparison
NZ_AP018146.1 See Comparison
NZ_CP071396.1 See Comparison
NZ_CP070442.1 See Comparison
NZ_CP070422.1 See Comparison
NZ_CP070456.1 See Comparison
NZ_AP024206.1 See Comparison
NZ_MN092230.1 See Comparison
NZ_MT663954.1 See Comparison
NZ_MN276081.1 See Comparison
NZ_MN276079.1 See Comparison
NZ_MN565271.1 See Comparison
NZ_MN276078.1 See Comparison
NZ_CP064177.1 See Comparison
NZ_KX023261.1 See Comparison
NZ_LC545851.1 See Comparison
NZ_MN276080.1 See Comparison
NZ_LC536680.1 See Comparison
CP117206.1 See Comparison
LC744484.1 See Comparison
LC744481.1 See Comparison
LC744460.1 See Comparison
LC744513.1 See Comparison
LC744509.1 See Comparison
LC744446.1 See Comparison
NZ_ON209145.1 See Comparison
LC744495.1 See Comparison
LC744492.1 See Comparison
NZ_ON209141.1 See Comparison
NZ_CP110663.1 See Comparison
NZ_ON209147.1 See Comparison
NZ_ON209148.1 See Comparison
NZ_ON209136.1 See Comparison
NZ_CP110659.1 See Comparison
NZ_CP106917.1 See Comparison
NZ_CP106910.1 See Comparison
NZ_OM791348.1 See Comparison
NZ_CP102890.1 See Comparison
NZ_CP103320.1 See Comparison
NZ_CP101261.1 See Comparison
NZ_CP102924.1 See Comparison
NZ_CP102892.1 See Comparison
NZ_CP101238.1 See Comparison
NZ_CP101249.1 See Comparison
NZ_CP101255.1 See Comparison
NZ_CP101243.1 See Comparison
NZ_CP099447.1 See Comparison
NZ_OW967968.1 See Comparison
LC716358.1 See Comparison
NZ_CP095587.1 See Comparison
NZ_CP086225.1 See Comparison
NZ_CP095617.1 See Comparison
NZ_MT621562.1 See Comparison
NZ_MT621561.1 See Comparison
CP043604.1 See Comparison
NZ_CP060911.1 See Comparison
NZ_CP060876.1 See Comparison
NZ_CP060905.1 See Comparison
NZ_CP060901.1 See Comparison
NZ_CP043281.1 See Comparison
NZ_CP060888.1 See Comparison
NZ_KU761328.1 See Comparison
CP090287.1 See Comparison
CP090248.1 See Comparison
NZ_MW762473.1 See Comparison
NZ_CP082124.1 See Comparison
NZ_CP021759.1 See Comparison
NZ_CP021692.1 See Comparison
NZ_CP021534.1 See Comparison
NZ_CP012990.1 See Comparison
NZ_CP014006.1 See Comparison
NC_022740.1 See Comparison
NZ_AP019679.1 See Comparison
NZ_CP034957.1 See Comparison
NZ_CP034965.1 See Comparison
NZ_CP035125.1 See Comparison
NZ_CP033399.1 See Comparison
NZ_CP032889.1 See Comparison
NZ_CP031725.1 See Comparison
NZ_CP031138.1 See Comparison
CP028705.1 See Comparison
NZ_CP028718.1 See Comparison
LC778279.1 See Comparison
NZ_OQ230784.1 See Comparison
NZ_CP123242.1 See Comparison
NZ_CP093504.1 See Comparison
NZ_CP093473.1 See Comparison
NZ_MK986791.1 See Comparison
NZ_CP093230.1 See Comparison
NZ_CP060966.1 See Comparison
NZ_CP060972.1 See Comparison
NZ_CP060883.1 See Comparison
NZ_CP054130.1 See Comparison
NZ_CP090459.1 See Comparison
NZ_MZ836800.1 See Comparison
NZ_CP086339.1 See Comparison
NZ_CP086341.1 See Comparison
NZ_CP086557.1 See Comparison
NZ_CP086343.1 See Comparison
NZ_CP086335.1 See Comparison
NZ_CP086337.1 See Comparison
NZ_CP086289.1 See Comparison
NZ_CP072470.1 See Comparison
NZ_CP036312.1 See Comparison
NZ_CP034744.1 See Comparison
NZ_CP032424.1 See Comparison
NZ_CP026577.2 See Comparison
NZ_CP028577.1 See Comparison
NZ_CP024833.1 See Comparison
NZ_CP024825.1 See Comparison
NZ_CP024818.1 See Comparison
CP024820.1 See Comparison
NZ_CP137438.1 See Comparison
NZ_OR233059.1 See Comparison
NZ_CP095678.1 See Comparison
NZ_CP139378.1 See Comparison
NZ_CP123049.1 See Comparison
NZ_CP139889.1 See Comparison
NZ_CP139893.1 See Comparison
NZ_CP142039.1 See Comparison
NZ_CP141672.1 See Comparison
NZ_CP139491.1 See Comparison
NZ_CP139384.1 See Comparison
NZ_AP023210.1 See Comparison
LC789760.1 See Comparison
LC789759.1 See Comparison
LC789758.1 See Comparison
LC789757.1 See Comparison
CP040446.1 See Comparison
NZ_MK372390.1 See Comparison
NZ_MK848866.1 See Comparison
NZ_MK372389.1 See Comparison
NZ_MN064714.1 See Comparison
NZ_MK618661.1 See Comparison
NZ_MK628734.1 See Comparison
NZ_MK256964.1 See Comparison
NZ_MH341575.1 See Comparison
NZ_MH161191.1 See Comparison
NZ_MH234500.1 See Comparison
NZ_MH234508.1 See Comparison
NZ_MH500845.1 See Comparison
NZ_MK317995.1 See Comparison
NZ_MH234507.1 See Comparison
NZ_MH286947.1 See Comparison
NZ_MK033584.1 See Comparison
NZ_MH234498.1 See Comparison
NZ_MH234497.1 See Comparison
NZ_MK033582.1 See Comparison
NZ_MH286948.1 See Comparison
NZ_MK033581.1 See Comparison
NZ_MK033577.1 See Comparison
NZ_MH523639.1 See Comparison
NZ_MH286945.1 See Comparison
NZ_MF547508.1 See Comparison
NZ_MF547507.1 See Comparison
NZ_MF547509.1 See Comparison
NZ_MH234506.1 See Comparison
NZ_MG825384.1 See Comparison
NZ_MF547510.1 See Comparison
NZ_MH234503.1 See Comparison
NZ_KX214669.1 See Comparison
NZ_CP102890.1 See Comparison
NZ_KX470735.1 See Comparison
NZ_KM400601.1 See Comparison
NZ_AP018146.1 See Comparison
NZ_CP071396.1 See Comparison
NZ_CP070442.1 See Comparison
NZ_CP070422.1 See Comparison
NZ_CP070456.1 See Comparison
NZ_MW218142.1 See Comparison
NZ_AP024206.1 See Comparison
NZ_MT663954.1 See Comparison
NZ_MN092230.1 See Comparison
NZ_MN276079.1 See Comparison
NZ_MN565271.1 See Comparison
NZ_MN276078.1 See Comparison
NZ_MK986791.1 See Comparison
NZ_LC545851.1 See Comparison
NZ_CP064177.1 See Comparison
NZ_KX023261.1 See Comparison
NZ_MN276080.1 See Comparison
NZ_MN276081.1 See Comparison
NZ_LC536680.1 See Comparison
CP117206.1 See Comparison
LC744513.1 See Comparison
LC744509.1 See Comparison
LC744495.1 See Comparison
LC744492.1 See Comparison
LC744484.1 See Comparison
LC744481.1 See Comparison
LC744460.1 See Comparison
LC744446.1 See Comparison
NZ_ON209147.1 See Comparison
NZ_ON209148.1 See Comparison
NZ_ON209136.1 See Comparison
NZ_ON209145.1 See Comparison
NZ_ON209141.1 See Comparison
NZ_CP110663.1 See Comparison
NZ_CP110659.1 See Comparison
NZ_CP106917.1 See Comparison
NZ_CP106910.1 See Comparison
NZ_OM791348.1 See Comparison
NZ_CP103320.1 See Comparison
NZ_CP101261.1 See Comparison
NZ_CP102924.1 See Comparison
NZ_CP102892.1 See Comparison
NZ_CP101238.1 See Comparison
NZ_CP101249.1 See Comparison
NZ_CP101243.1 See Comparison
NZ_CP101255.1 See Comparison
NZ_CP099447.1 See Comparison
NZ_OW967968.1 See Comparison
LC716358.1 See Comparison
NZ_CP095587.1 See Comparison
NZ_CP086225.1 See Comparison
NZ_CP095617.1 See Comparison
NZ_CP095678.1 See Comparison
NZ_MT621562.1 See Comparison
NZ_MT621561.1 See Comparison
NZ_CP093230.1 See Comparison
NZ_CP060966.1 See Comparison
NZ_CP060972.1 See Comparison
NZ_CP060876.1 See Comparison
CP043604.1 See Comparison
NZ_CP060905.1 See Comparison
NZ_CP060883.1 See Comparison
NZ_CP060901.1 See Comparison
NZ_CP060911.1 See Comparison
NZ_CP043281.1 See Comparison
NZ_CP060888.1 See Comparison
NZ_CP054130.1 See Comparison
NZ_KU761328.1 See Comparison
NZ_CP090459.1 See Comparison
CP090287.1 See Comparison
CP090248.1 See Comparison
NZ_CP086339.1 See Comparison
NZ_CP086341.1 See Comparison
NZ_CP086557.1 See Comparison
NZ_CP086343.1 See Comparison
NZ_CP086335.1 See Comparison
NZ_CP086337.1 See Comparison
NZ_MZ836800.1 See Comparison
NZ_MW762473.1 See Comparison
NZ_CP072470.1 See Comparison
NZ_CP086289.1 See Comparison
NZ_CP082124.1 See Comparison
NZ_CP021692.1 See Comparison
NZ_CP021759.1 See Comparison
NZ_CP021534.1 See Comparison
NZ_CP012990.1 See Comparison
NC_022740.1 See Comparison
NZ_AP019679.1 See Comparison
NZ_CP036312.1 See Comparison
NZ_CP034965.1 See Comparison
NZ_CP014006.1 See Comparison
NZ_CP034957.1 See Comparison
NZ_CP035125.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore