Plasmid NZ_LC511660.1
Sequence
Nucleotide Information
| Accession | NZ_LC511660.1 |
|---|---|
| Description | Escherichia coli strain 2017.19.01CC plasmid p2017.19.01CC, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 33309 bp |
| GC Content | 0.42 % |
| Created at NCBI | Aug. 4, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14090011 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Viet Nam,Thai Binh |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 20.53/106.39 |
| Address | Viet Nam,Thai Binh |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | mcr-1.1 | copy | ||
| PGAG | virB10 | copy | ||
| PGAG | virB9 | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | VirB4 family type IV secretion/conjugal transfer ATPase | copy | ||
| PGAG | TrbC/VirB2 family protein | copy | ||
| PGAG | lytic transglycosylase domain-containing protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 46 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_013718_00044 | MPF_T | 381 | 1286 | minus | 99.669 | 100 | 0 | 592 |
| mate-pair-formation | NC_013718_00045 | MPF_T | 1286 | 1969 | minus | 100 | 100 | 1.4399999999999998e-137 | 432 |
| mate-pair-formation | NC_021079_00038 | MPF_T | 2511 | 3578 | minus | 99.719 | 99 | 2.69e-172 | 539 |
| mate-pair-formation | NC_013718_00041 | MPF_T | 29700 | 31559 | minus | 98.71 | 100 | 0 | 1163 |
| replicon | 000224__NC_022105_00002 | IncX4 | 16203 | 17075 | plus | 100 | 100 | 0 | 1613 |
| relaxase | NC_013718_00057 | MOBP | 8985 | 10211 | minus | 99.511 | 100 | 0 | 843 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 6 of 6 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |