Plasmid NZ_CP063489.1
Sequence
Nucleotide Information
Accession | NZ_CP063489.1 |
---|---|
Description | Escherichia coli strain EF7-18-51 plasmid pEF7-18-51_2, complete sequence |
Source | refseq |
Topology | circular |
Length | 33309 bp |
GC Content | 0.42 % |
Created at NCBI | Feb. 28, 2021 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
---|
Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 16387483 |
---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | Laos |
---|---|
Original Query Type | name |
Coordinates (Lat/Lon) | 20.02/103.38 |
Address | Laos |
ECOSYSTEM
Original Query | Gallus gallus,chicken stool |
---|---|
Classification | fecal,gastrointestinal_system,host_associated |
Host-associated Taxon |
|
DISEASE
Original Query | None |
---|---|
DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | mcr-1.1 | copy | ||
PGAG | cag pathogenicity island Cag12 family protein | copy | ||
PGAG | TrbM/KikA/MpfK family conjugal transfer protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | type IA DNA topoisomerase | copy | ||
PGAG | hha | copy | ||
PGAG | H-NS family nucleoid-associated regulatory protein | copy | ||
PGAG | IS6-like element IS26 family transposase | copy | ||
PGAG | dqlB | copy | ||
PGAG | division plane positioning ATPase MipZ | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 45 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
---|---|---|---|---|---|---|---|
Loading... | |||||||
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Loading... | ||||||||||||
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
Loading... | ||||||||||
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
relaxase | NC_013718_00057 | MOBP | 19183 | 20409 | plus | 99.511 | 100 | 0 | 843 |
mate-pair-formation | NC_021079_00038 | MPF_T | 25816 | 26883 | plus | 99.719 | 99 | 2.69e-172 | 539 |
mate-pair-formation | NC_013718_00045 | MPF_T | 27425 | 28108 | plus | 100 | 100 | 1.4399999999999998e-137 | 432 |
mate-pair-formation | NC_013718_00044 | MPF_T | 28108 | 29013 | plus | 99.669 | 100 | 0 | 592 |
mate-pair-formation | NC_013718_00041 | MPF_T | 31144 | 33003 | plus | 98.71 | 100 | 0 | 1163 |
replicon | 000224__NC_022105_00002 | IncX4 | 12319 | 13191 | minus | 100 | 100 | 0 | 1613 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 6 of 6 entries