Plasmid CP090286.1

Sequence

Nucleotide Information

Accession CP090286.1
Description Escherichia coli strain E-T344-1 plasmid pE-T344-1-mcr-1, complete sequence
Source insd
Topology circular
Length 34645 bp
GC Content 0.42 %
Created at NCBI Jan. 10, 2022



Assembly

Genome Data Information

Accession GCF_021398175.1
Assembly Coverage 200


Biosample

Curated Collection Information

Accession 24394418

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens,anal swab specimens
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP059291.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_CP091567.1 See Comparison
NZ_KU761327.1 See Comparison
CP077665.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_AP027975.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP065064.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_AP027975.1 See Comparison
NZ_KU761327.1 See Comparison
CP077665.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_CP065064.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_KU761327.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_CP033349.2 See Comparison
CP090286.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_CP072316.1 See Comparison
CP077665.1 See Comparison
NZ_CP065064.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_AP027975.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_KU761327.1 See Comparison
CP077665.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_CP065064.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_AP027975.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_KU761327.1 See Comparison
NZ_AP027975.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_CP065064.1 See Comparison
CP077665.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_KU761327.1 See Comparison
CP077665.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_AP027975.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_LT838201.1 See Comparison
NZ_CP065064.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_OR828567.1 See Comparison
NZ_CP059291.1 See Comparison
NZ_LC477138.1 See Comparison
NZ_LC479085.1 See Comparison
NZ_KY463451.1 See Comparison
NZ_MK477604.1 See Comparison
NZ_MH522422.1 See Comparison
NZ_MH061196.1 See Comparison
NZ_MF136779.1 See Comparison
NZ_MG210937.1 See Comparison
NZ_MF774182.1 See Comparison
NZ_MG257881.1 See Comparison
NZ_KY463454.1 See Comparison
NZ_KX772777.1 See Comparison
NZ_KX711706.1 See Comparison
NZ_KY120364.1 See Comparison
NZ_CP053735.1 See Comparison
NZ_MH715959.1 See Comparison
NZ_MG747473.1 See Comparison
NZ_CP063489.1 See Comparison
NZ_CP045460.1 See Comparison
NZ_CP046719.1 See Comparison
NZ_CP047664.1 See Comparison
NZ_MW010025.1 See Comparison
NZ_MW010027.1 See Comparison
NZ_MW010026.1 See Comparison
NZ_KU761327.1 See Comparison
NZ_LC511660.1 See Comparison
NZ_OL504740.1 See Comparison
NZ_CP101861.1 See Comparison
NZ_CP101374.1 See Comparison
NZ_CP101370.1 See Comparison
NZ_CP091567.1 See Comparison
NZ_MW191862.1 See Comparison
NZ_CP060967.1 See Comparison
NZ_AP027975.1 See Comparison
CP077665.1 See Comparison
NZ_CP033349.2 See Comparison
NZ_CP065064.1 See Comparison
NZ_CP032076.1 See Comparison
NZ_CP072316.1 See Comparison
NZ_LT838201.1 See Comparison
NZ_AP027982.1 See Comparison
NZ_AP027962.1 See Comparison
NZ_AP027959.1 See Comparison
NZ_CP110172.1 See Comparison
NZ_CP104609.1 See Comparison
NZ_CP064013.1 See Comparison
NZ_CP125358.1 See Comparison
NZ_AP027817.1 See Comparison
NZ_AP027858.1 See Comparison
NZ_CP139890.1 See Comparison
NZ_CP139894.1 See Comparison
NZ_CP124870.1 See Comparison
NZ_OR828567.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2