Plasmid NZ_CP101370.1
Sequence
Nucleotide Information
| Accession | NZ_CP101370.1 |
|---|---|
| Description | Salmonella enterica strain SC2014238 plasmid pSC2014238-mcr-33k, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 33309 bp |
| GC Content | 0.42 % |
| Created at NCBI | July 23, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (28901) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 29630085 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 30.67N;104.07E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 30.67/104.07 |
| Address | 锣锅巷, Gulou, Xiyuhe, Qingyang District, Chengdu, High-Tech Zone (West), Sichuan, 610015, China |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Salmonella gastroenteritis |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | mcr-1.1 | copy | ||
| PGAG | TrbM/KikA/MpfK family conjugal transfer protein | copy | ||
| PGAG | cag pathogenicity island Cag12 family protein | copy | ||
| PGAG | taxB | copy | ||
| PGAG | virB11 | copy | ||
| PGAG | virB10 | copy | ||
| PGAG | virB9 | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| PGAG | type IV secretion system protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 45 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_013718_00041 | MPF_T | 432 | 2291 | minus | 98.71 | 100 | 0 | 1163 |
| mate-pair-formation | NC_013718_00044 | MPF_T | 4422 | 5327 | minus | 99.669 | 100 | 0 | 592 |
| mate-pair-formation | NC_013718_00045 | MPF_T | 5327 | 6010 | minus | 100 | 100 | 1.4399999999999998e-137 | 432 |
| mate-pair-formation | NC_021079_00038 | MPF_T | 6552 | 7619 | minus | 99.719 | 99 | 2.69e-172 | 539 |
| relaxase | NC_013718_00057 | MOBP | 13026 | 14252 | minus | 99.511 | 100 | 0 | 843 |
| replicon | 000224__NC_022105_00002 | IncX4 | 20244 | 21116 | plus | 100 | 100 | 0 | 1613 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 6 of 6 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |