Plasmid NZ_CP032243.1
Sequence
Nucleotide Information
| Accession | NZ_CP032243.1 |
|---|---|
| Description | Klebsiella pneumoniae strain XJ-K2 plasmid unnamed3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 84855 bp |
| GC Content | 0.54 % |
| Created at NCBI | Jan. 15, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 9988182 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 31.34N;121.37E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 31.34/121.37 |
| Address | éŚćĺ°é, Gucun, Baoshan District, Shanghai, 201906, China |
ECOSYSTEM
| Original Query | Homo sapiens,blood |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | blood stream infections |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | blaLAP-2 | copy | ||
| amrfinderplus | dfrA14 | copy | ||
| PGAG | IS91-like element ISVsa3 family transposase | copy | ||
| PGAG | IS110-like element IS5075 family transposase | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | intI1 | copy | ||
| PGAG | recombinase family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 95 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_021198_00249 | MPF_I | 17711 | 19900 | minus | 96.986 | 100 | 0 | 1388 |
| replicon | 000119__MF133496_00001 | IncFII | 15666 | 16292 | minus | 100 | 100 | 0 | 1158 |
| relaxase | NC_021198_00256 | MOBP | 48660 | 50585 | minus | 95.327 | 100 | 0 | 1219 |
| mate-pair-formation | NC_021198_00243 | MPF_I | 25980 | 27173 | minus | 95.729 | 100 | 0 | 749 |
| mate-pair-formation | NC_021198_00240 | MPF_I | 30850 | 31248 | minus | 92.481 | 100 | 6.379999999999996e-69 | 231 |
| mate-pair-formation | NC_021198_00239 | MPF_I | 31325 | 31837 | minus | 95.322 | 97 | 2.38e-76 | 254 |
| mate-pair-formation | NC_021198_00238 | MPF_I | 31850 | 32566 | minus | 86.611 | 100 | 3.52e-125 | 397 |
| mate-pair-formation | NC_021198_00236 | MPF_I | 33920 | 34903 | minus | 95.732 | 100 | 3.28e-180 | 561 |
| mate-pair-formation | NC_021198_00235 | MPF_I | 35074 | 35733 | minus | 96.364 | 94 | 1.22e-141 | 444 |
| mate-pair-formation | NC_021198_00234 | MPF_I | 35772 | 36122 | minus | 91.453 | 100 | 6.28e-58 | 198 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |